Pre_GI: BLASTP Hits

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Query: NC_003065:27163:63381 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 63381, End: 64499, Length: 1119

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003308:1:2997829978310961119Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceD-nopaline dehydrogenase0725
NC_014910:1912552:1933026193302619341861161Alicycliphilus denitrificans BC chromosome, complete genomefad dependent oxidoreductase5e-82305
NC_007948:4558000:4579787457978745809141128Polaromonas sp. JS666, complete genomeFAD dependent oxidoreductase1e-78293
NC_015724:339500:3540603540603551751116Cupriavidus necator N-1 plasmid BB2p, complete sequenceopine oxidase subunit B2e-70266
NC_007948:4646344:4669711466971146708291119Polaromonas sp. JS666, complete genomeFAD dependent oxidoreductase4e-70265
NC_008752:620802:6221756221756233471173Acidovorax avenae subsp. citrulli AAC00-1, complete genomeFAD dependent oxidoreductase4e-65248
NC_011982:206784:2278512278512289211071Agrobacterium vitis S4 plasmid pTiS4, complete sequenceD-nopaline dehydrogenase3e-63242
NC_007948:4646344:4661759466175946628951137Polaromonas sp. JS666, complete genomeFAD dependent oxidoreductase3e-62239
NC_015136:2282488:2325858232585823270031146Burkholderia sp. CCGE1001 chromosome 1, complete sequenceFAD dependent oxidoreductase3e-59229
NC_020210:3341976:3350044335004433511171074Geobacillus sp. GHH01, complete genomesarcosine oxidase subunit beta1e-28127
NC_009328:3322802:3330853333085333319261074Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesarcosine oxidase subunit beta1e-28127
NC_015172:1075592:1104747110474711058681122Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeGlycine oxidase4e-1996.3
NC_021184:2936244:2944356294435629454771122Desulfotomaculum gibsoniae DSM 7213, complete genomeglycine/D-amino acid oxidase, deaminating9e-1891.3
NC_017030:4588167:4606880460688046079951116Corallococcus coralloides DSM 2259 chromosome, complete genomeglycine oxidase ThiO6e-1788.6
NC_020291:5409587:5419225541922554203521128Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeglycine/D-amino acid oxidase3e-1582.8
NC_009718:643200:6625756625756637471173Fervidobacterium nodosum Rt17-B1, complete genomeFAD dependent oxidoreductase1e-1480.9
NC_016641:2773757:2781634278163427828421209Paenibacillus terrae HPL-003 chromosome, complete genomesarcosine oxidase subunit beta3e-1480.1
NC_012792:310443:3104433104433133972955Variovorax paradoxus S110 chromosome 2, complete genomeFAD dependent oxidoreductase5e-1479
NC_013947:4363250:4377230437723043784111182Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeFAD dependent oxidoreductase1e-1377.8
NC_007005:2686551:2707924270792427091081185Pseudomonas syringae pv. syringae B728a, complete genomeFAD dependent oxidoreductase2e-1377
NC_013523:2560000:2574631257463125757641134Sphaerobacter thermophilus DSM 20745 chromosome 1, complete genomeFAD dependent oxidoreductase5e-1375.5
NC_015740:926920:9394409394409405371098Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeFAD-binding oxidoreductase2e-1170.1
NC_014831:2201246:2223388222338822245871200Thermaerobacter marianensis DSM 12885 chromosome, complete genomeglycine oxidase ThiO5e-1168.9
NC_019896:2805098:2830603283060328317121110Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeGlycine oxidase7e-1168.6
NC_021171:1689518:1704959170495917060681110Bacillus sp. 1NLA3E, complete genomeFAD-dependent glycine oxidase ThiO1e-1067.4
NC_005773:5684000:5706494570649457076481155Pseudomonas syringae pv. phaseolicola 1448A, complete genomeoxidoreductase, FAD-binding2e-1067
NC_010676:2793237:2819758281975828208821125Burkholderia phytofirmans PsJN chromosome 2, complete sequenceFAD dependent oxidoreductase4e-1065.9
NC_014394:2228470:2232697223269722337611065Gallionella capsiferriformans ES-2 chromosome, complete genomeglycine oxidase ThiO8e-1065.1
NC_005945:754517:7561427561427572511110Bacillus anthracis str. Sterne, complete genomeglycine oxidase1e-0964.3
NC_007948:4558000:4583587458358745847171131Polaromonas sp. JS666, complete genomeFAD dependent oxidoreductase4e-0962.8
NC_015410:1144272:1156632115663211576961065Pseudomonas mendocina NK-01 chromosome, complete genomeglycine oxidase ThiO6e-0962
NC_005125:2269343:2288011228801122890661056Gloeobacter violaceus PCC 7421, complete genomeprobable oxidoreductase8e-0961.6
NC_009439:1075170:1088508108850810895931086Pseudomonas mendocina ymp, complete genomeglycine oxidase ThiO9e-0961.6
NC_011144:2674242:2691607269160726927881182Phenylobacterium zucineum HLK1, complete genomeFAD dependent oxidoreductase1e-0861.2
NC_013926:71186:8478584785859421158Aciduliprofundum boonei T469 chromosome, complete genomeFAD dependent oxidoreductase2e-0860.8
NC_010623:1871492:1896546189654618977031158Burkholderia phymatum STM815 chromosome 2, complete sequenceFAD dependent oxidoreductase2e-0860.5
NC_014205:760428:7604287604287615701143Staphylothermus hellenicus DSM 12710 chromosome, complete genomeFAD dependent oxidoreductase3e-0859.7
NC_015556:4118304:4123843412384341249161074Pseudomonas fulva 12-X chromosome, complete genomeglycine oxidase ThiO3e-0859.7
NC_008463:5364428:5368835536883553699291095Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative Glycine/D-amino acid oxidases7e-0858.5
NC_015634:2694706:2697119269711926982401122Bacillus coagulans 2-6 chromosome, complete genomeFAD dependent oxidoreductase7e-0858.5
NC_008027:3844355:3868758386875838698041047Pseudomonas entomophila L48, complete genomeoxidase9e-0858.2
NC_000918:465627:4835834835834846441062Aquifex aeolicus VF5, complete genomehypothetical protein9e-0858.2
NC_010730:741842:7791637791637802601098Sulfurihydrogenibium sp. YO3AOP1, complete genomeglycine oxidase ThiO1e-0757.8
NC_018080:5192264:5197779519777951988551077Pseudomonas aeruginosa DK2 chromosome, complete genomeD-amino acid oxidase1e-0757.4
NC_012483:3731542:3798659379865937997921134Acidobacterium capsulatum ATCC 51196, complete genomeoxidoreductase, FAD-dependent2e-0757.4
NC_007492:3954345:3993694399369439949531260Pseudomonas fluorescens PfO-1, complete genomeFAD dependent oxidoreductase2e-0757
NC_014815:4621552:4650013465001346511611149Micromonospora sp. L5 chromosome, complete genomefad dependent oxidoreductase2e-0757
NC_008593:2281896:2294825229482522962581434Clostridium novyi NT, complete genomeglycerol-3-phosphate dehydrogenase4e-0756.2
NC_020829:809457:8109308109308120421113Pseudomonas denitrificans ATCC 13867, complete genomeFAD-dependent oxidoreductase4e-0755.8
NC_015425:2528549:2545129254512925465621434Clostridium botulinum BKT015925 chromosome, complete genomeFAD-dependent oxidoreductase1e-0654.7
NC_009434:1068281:108088810808881081748861Pseudomonas stutzeri A1501, complete genomeoxidoreductase, FAD-binding1e-0654.3
NC_015942:1711026:1727085172708517281761092Acidithiobacillus ferrivorans SS3 chromosome, complete genomeFAD dependent oxidoreductase2e-0653.9
NC_013172:3093467:3105958310595831071241167Brachybacterium faecium DSM 4810, complete genomeglycine/D-amino acid oxidase, deaminating3e-0653.5
NC_013522:991649:1012936101293610140871152Thermanaerovibrio acidaminovorans DSM 6589, complete genomeFAD dependent oxidoreductase3e-0653.1
NC_008027:5842740:5844182584418258454321251Pseudomonas entomophila L48, complete genomehydrogen cyanide synthase HcnC4e-0652.8
NC_011992:3375929:3375929337592933772391311Acidovorax ebreus TPSY, complete genomeD-amino-acid dehydrogenase5e-0652.4