Pre_GI: BLASTP Hits

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Query: NC_003065:27163:35792 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 35792, End: 36475, Length: 684

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003308:1:238923893072684Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence5 protein1e-120432
NC_003065:27163:468644686447529666Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceindole-3-lactate synthase3e-54211
NC_003308:1:136051360514126522Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencegene 5 protein1e-41169
NC_003308:1:757875788273696Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceD protein2e-26119
NC_003065:27163:409814098141676696Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencehypothetical protein2e-26119
NC_003065:27163:421554215543099945Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencehypothetical protein2e-0859.3
NC_003308:1:875287529696945Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceE protein2e-0859.3
NC_003065:27163:395423954240273732Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencebeta-glucosidase6e-0651.2
NC_003308:1:613961396870732Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceC' protein6e-0651.2