Pre_GI: BLASTP Hits

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Query: NC_003065:27163:58383 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 58383, End: 59498, Length: 1116

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003308:1:2498024980260951116Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceornithine cyclodeaminase0726
NC_019973:5716453:5736794573679457378671074Mesorhizobium australicum WSM2073, complete genomeputative ornithine cyclodeaminase, mu-crystallin2e-145515
NC_015675:6342164:6362505636250563635781074Mesorhizobium opportunistum WSM2075 chromosome, complete genomeOrnithine cyclodeaminase2e-145515
NC_014923:5787493:5807834580783458089071074Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeOrnithine cyclodeaminase2e-145515
NC_015186:2165628:2167151216715121682211071Acidiphilium multivorum AIU301, complete genomeornithine cyclodeaminase2e-142505
NC_014034:2253649:2271812227181222728641053Rhodobacter capsulatus SB1003 chromosome, complete genomeornithine cyclodeaminase-18e-127453
NC_007482:607365:6073656073656084351071Pseudoalteromonas haloplanktis TAC125 chromosome II, completeornithine cyclodeaminase2e-106385
NC_015733:2720183:2726967272696727280191053Pseudomonas putida S16 chromosome, complete genomeornithine cyclodeaminase1e-99363
NC_007948:4558000:4569675456967545707331059Polaromonas sp. JS666, complete genomeOrnithine cyclodeaminase3e-97355
NC_003296:556836:6038426038426048911050Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeornithine cyclodeaminase3e-97355
NC_015379:3570658:3581989358198935830441056Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,ornithine cyclodeaminase1e-91337
NC_008601:1518136:1532670153267015336861017Francisella tularensis subsp. novicida U112, complete genomeornithine cyclodeaminase6e-88324
NC_010336:1335558:1338148133814813391641017Francisella philomiragia subsp. philomiragia ATCC 25017, completeOrnithine cyclodeaminase2e-85316
NC_009257:386283:386283386283387218936Francisella tularensis subsp. tularensis WY96-3418 chromosome,ornithine cyclodeaminase5e-80298
NC_009749:558171:558171558171559031861Francisella tularensis subsp. holarctica FTA, complete genomeornithine cyclodeaminase5e-74278
NC_007880:556334:556334556334557182849Francisella tularensis subsp. holarctica, complete genomeornithine cyclodeaminase3e-72272
NC_015320:790137:8061088061088071151008Archaeoglobus veneficus SNP6 chromosome, complete genomealanine dehydrogenase3e-28126
NC_020126:5470090:5475502547550254766021101Myxococcus stipitatus DSM 14675, complete genomeornithine cyclodeaminase2e-24113
NC_009464:1397739:140147014014701402441972Uncultured methanogenic archaeon RC-I, complete genomeornithine cyclodeaminase8e-24111
NC_013526:911909:940597940597941505909Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeOrnithine cyclodeaminase2e-23110
NC_003305:1035342:105174610517461052690945Agrobacterium tumefaciens str. C58 chromosome linear, completeornithine cyclodeaminase3e-23109
NC_003063:1019674:102206610220661023052987Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein3e-23109
NC_013173:1231213:125346112534611254420960Desulfomicrobium baculatum DSM 4028, complete genomeOrnithine cyclodeaminase7e-21101
NC_007929:1290568:131007413100741311060987Lactobacillus salivarius subsp. salivarius UCC118, complete genomeOrnithine cyclodeaminase2e-20100
NC_004461:277291:316851316851317801951Staphylococcus epidermidis ATCC 12228, complete genomeornithine cyclodeaminase6e-2099
NC_014507:2568933:258515825851582586093936Methanoplanus petrolearius DSM 11571 chromosome, complete genomeornithine cyclodeaminase6e-2098.6
NC_019962:1750497:180660218066021807591990Natrinema pellirubrum DSM 15624, complete genomeputative ornithine cyclodeaminase, mu-crystallin1e-1894.4
NC_007168:2448422:245152424515242452483960Staphylococcus haemolyticus JCSC1435, complete genomeornithine cyclodeaminase2e-1893.6
NC_020164:2219612:221961222196122220559948Staphylococcus warneri SG1, complete genomeornithine cyclodeaminase3e-1892.8
NC_013744:300000:312490312490313479990Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeOrnithine cyclodeaminase2e-1790.5
NC_015151:1872280:188119418811941882159966Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeornithine cyclodeaminase9e-1788.2
NC_013093:2895511:289650028965002897438939Actinosynnema mirum DSM 43827, complete genomeOrnithine cyclodeaminase8e-1685.1
NC_009328:2378345:2387462238746223884661005Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeectoine utilization protein EutC2e-1584
NC_015138:201323:202271202271203254984Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeOrnithine cyclodeaminase2e-1583.6
NC_013194:761166:778243778243779202960Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeOrnithine cyclodeaminase3e-1583.2
NC_008752:166877:165897165897166880984Acidovorax avenae subsp. citrulli AAC00-1, complete genomeOrnithine cyclodeaminase4e-1582.4
NC_016943:3270308:328337132833713284318948Blastococcus saxobsidens DD2, complete genomeornithine cyclodeaminase/mu-crystallin3e-1479.7
NC_007908:1010162:102502710250271025998972Rhodoferax ferrireducens T118, complete genomeOrnithine cyclodeaminase2e-1377.4
NC_018000:1852691:186701018670101867891882Sinorhizobium fredii USDA 257 chromosome, complete genomeornithine cyclodeaminase 24e-1376.3
NC_010999:349252:354632354632355627996Lactobacillus casei, complete genomeOrnithine cyclodeaminase/mu-crystallin:Shikimate/quinate 5-dehydrogenase1e-1274.3
NC_014334:369974:377906377906378901996Lactobacillus casei str. Zhang chromosome, complete genomeputative ornithine cyclodeaminase1e-1274.3
NC_002947:4994335:502668950266895027681993Pseudomonas putida KT2440, complete genomeornithine cyclodeaminase2e-1273.6
NC_008786:2425314:244290624429062443889984Verminephrobacter eiseniae EF01-2, complete genomeOrnithine cyclodeaminase4e-1272.8
NC_013202:906044:935148935148936140993Halomicrobium mukohataei DSM 12286, complete genomeOrnithine cyclodeaminase4e-1272.8
NC_009380:1177316:118035711803571181346990Salinispora tropica CNB-440 chromosome, complete genomeornithine cyclodeaminase3e-1170.1
NC_009832:3313058:332765333276533328609957Serratia proteamaculans 568, complete genomeOrnithine cyclodeaminase7e-1168.6
NC_010994:57362:611626116262109948Rhizobium etli CIAT 652, complete genomeornithine cyclodeaminase protein1e-1067.8
NC_015727:1294532:132413713241371325135999Cupriavidus necator N-1 plasmid BB1p, complete sequenceornithine cyclodeaminase Ocd4e-1065.9
NC_011985:61003:654806548066430951Agrobacterium radiobacter K84 chromosome 1, complete genomeornithine cyclodeaminase protein8e-1065.1
NC_012587:3613162:361933436193343620281948Rhizobium sp. NGR234, complete genomeornithine cyclodeaminase/mu-crystallin family protein3e-0963.2
NC_007761:57199:610116101161958948Rhizobium etli CFN 42, complete genomeornithine cyclodeaminase protein5e-0859.3
NC_008380:58232:620456204562992948Rhizobium leguminosarum bv. viciae 3841, complete genomeOrnithine cyclodeaminase (OCD).1e-0757.8
NC_012850:4422966:442742644274264428373948Rhizobium leguminosarum bv. trifolii WSM1325, complete genomeOrnithine cyclodeaminase3e-0756.6
NC_011894:4066926:407412040741204075085966Methylobacterium nodulans ORS 2060, complete genomeornithine cyclodeaminase/mu-crystallin8e-0755.1
NC_016629:2784000:278836227883622789264903Desulfovibrio africanus str. Walvis Bay chromosome, completeornithine cyclodeaminase/mu-crystallin1e-0654.7
NC_013947:6678000:669618966961896697094906Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin5e-0652.4