Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:1075170 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
10751701076120951bifunctional riboflavin kinaseFMN adenylyltransferaseQuickGO ontologyBLASTP
107611710789482832isoleucyl-tRNA synthetaseQuickGO ontologyBLASTP
10789411079450510lipoprotein signal peptidaseQuickGO ontologyBLASTP
10794471079884438peptidylprolyl isomerase FKBP-typeQuickGO ontologyBLASTP
108002310809679454-hydroxy-3-methylbut-2-enyl diphosphate reductaseQuickGO ontologyBLASTP
10810901081515426Tfp pilus assembly protein PilE-like proteinQuickGO ontologyBLASTP
108151810852013684Tfp pilus assembly protein tip-associated adhesin PilY1-like proteinQuickGO ontologyBLASTP
10852131085860648Tfp pilus assembly protein PilX-like proteinQuickGO ontologyBLASTP
10858571086705849Tfp pilus assembly protein PilW-like proteinQuickGO ontologyBLASTP
10867021087262561type IV pilus modification protein PilVQuickGO ontologyBLASTP
10872711087759489Tfp pilus assembly protein FimT-like proteinQuickGO ontologyBLASTP
10879011088410510Tfp pilus assembly protein FimT-like proteinQuickGO ontologyBLASTP
108850810895931086glycine oxidase ThiOQuickGO ontologyBLASTP
108965610909961341two-component response regulator PilRQuickGO ontologyBLASTP
109099910925911593sensor protein PilSQuickGO ontologyBLASTP
10925811092823243hypothetical proteinBLASTP
10930351094027993DNA uptake lipoprotein-like proteinQuickGO ontologyBLASTP
10943691095343975ribosomal large subunit pseudouridine synthase DQuickGO ontologyBLASTP
10953401096071732hypothetical proteinBLASTP
10961931096795603TetR family transcriptional regulatorQuickGO ontologyBLASTP
109682210979311110NADHflavin oxidoreductaseNADH oxidaseQuickGO ontologyBLASTP