Pre_GI: BLASTP Hits

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Query: NC_010001:649000:650678 Clostridium phytofermentans ISDg, complete genome

Start: 650678, End: 651022, Length: 345

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014538:2158131:218091821809182181331414Thermoanaerobacter sp. X513 chromosome, complete genomehelix-turn-helix domain-containing protein9e-1268.9
NC_002737:1207880:121999812199981220753756Streptococcus pyogenes M1 GAS, complete genomeputative repressor - phage associated1e-1168.2
NC_003485:1228149:123886512388651239620756Streptococcus pyogenes MGAS8232, complete genomeputative repressor1e-1168.2
NC_019896:1989997:200906620090662009404339Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completetranscription regulator YobD2e-1167.4
NC_000964:2049899:205548820554882055826339Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein3e-1167
NC_014551:576000:577723577723578103381Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein1e-1065.5
NC_017195:2027430:204155520415552041794240Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completehypothetical protein1e-1065.5
NC_015913:117966:119554119554119772219Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeXRE family transcriptional regulator3e-1063.5
NC_013921:1915377:192814219281421928690549Thermoanaerobacter italicus Ab9 chromosome, complete genometranscriptional regulator, XRE family4e-1063.2
NC_015958:2174731:218947921894792190027549Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomehelix-turn-helix domain-containing protein5e-1063.2
NC_012034:2555447:257988525798852580199315Anaerocellum thermophilum DSM 6725, complete genometranscriptional regulator, XRE family6e-1062.8
NC_015573:2463123:248569424856942485930237Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein6e-1062.8
NC_011898:2509267:251475425147542515374621Clostridium cellulolyticum H10, complete genometranscriptional regulator, XRE family8e-1062.4
NC_016791:2888319:289017028901702890790621Clostridium sp. BNL1100 chromosome, complete genomeresponse regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains9e-1062.4
NC_011660:2924397:292631729263172926793477Listeria monocytogenes HCC23 chromosome, complete genomegp331e-0962
NC_006270:1415001:142528614252861425654369Bacillus licheniformis ATCC 14580, complete genomeprobable transcriptional regulator (phage-related)1e-0961.6
NC_006322:1415863:142614914261491426517369Bacillus licheniformis ATCC 14580, complete genomeYqaE1e-0961.6
NC_015601:627217:628845628845629261417Erysipelothrix rhusiopathiae str. Fujisawa, complete genomeXRE family transcriptional regulator3e-0960.8
NC_016048:1930089:194775419477541948359606Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein2e-0960.8
NC_014964:2272413:229248922924892292878390Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completehelix-turn-helix domain-containing protein5e-0960.1
NC_017179:1683199:168719916871991687747549Clostridium difficile BI1, complete genomephage regulatory protein5e-0959.7
NC_013198:1095591:110846011084601108798339Lactobacillus rhamnosus GG, complete genomeprophage protein, DNA-binding protein6e-0959.7
NC_015573:2463123:248716824871682487398231Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein8e-0959.3
NC_010516:2328288:234697823469782347427450Clostridium botulinum B1 str. Okra, complete genometranscriptional regulator7e-0959.3
NC_009706:1972000:199149419914941992135642Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein6e-0959.3
NC_007644:280000:289097289097289333237Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, XRE family8e-0958.9
NC_016894:3988180:400563340056334006028396Acetobacterium woodii DSM 1030 chromosome, complete genomeputative phage repressor9e-0958.9
NC_017025:1651870:166594816659481666286339Flavobacterium indicum GPTSA100-9, complete genometranscriptional regulator, XRE family9e-0958.9
NC_016048:751000:769269769269769643375Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein9e-0958.9
NC_015573:2463123:248662424866242486842219Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0858.5
NC_013385:90331:106210106210106566357Ammonifex degensii KC4, complete genometranscriptional regulator, XRE family2e-0858.2
NC_009706:2003194:202021320202132020998786Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein2e-0858.2
NC_011837:1935294:195171619517161952501786Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-0858.2
NC_009253:3017280:302629030262903026709420Desulfotomaculum reducens MI-1 chromosome, complete genomeXRE family transcriptional regulator1e-0858.2
NC_015573:2040500:204189420418942042295402Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0858.2
NC_009706:3341250:336020033602003360802603Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator2e-0857.8
NC_011837:3272752:329170232917023292304603Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-0857.8
NC_003212:57061:785057850578981477Listeria innocua Clip11262, complete genomehypothetical protein2e-0857.8
NC_009012:2927793:293408629340862934514429Clostridium thermocellum ATCC 27405, complete genometranscriptional regulator, XRE family3e-0857
NC_010321:35855:358553585536244390Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeXRE family transcriptional regulator4e-0857
NC_014964:35862:358623586236251390Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completehelix-turn-helix domain-containing protein4e-0857
NC_003212:1248000:124920512492051249633429Listeria innocua Clip11262, complete genomehypothetical protein4e-0856.6
NC_003485:1228149:123845112384511238663213Streptococcus pyogenes MGAS8232, complete genomeputative Cro-like repressor4e-0856.6
NC_002737:1207880:121958412195841219796213Streptococcus pyogenes M1 GAS, complete genomeputative Cro-like repressor protein - phage associated4e-0856.6
NC_015977:2966971:298258929825892983200612Roseburia hominis A2-183 chromosome, complete genomehypothetical protein5e-0856.6
NC_016048:3063888:309691430969143097129216Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein7e-0856.2
NC_002570:367000:370443370443370793351Bacillus halodurans C-125, complete genometranscriptional regulator (phage-related)6e-0856.2
NC_012214:1267589:127161312716131272011399Erwinia pyrifoliae Ep1/96, complete genomePutative phage regulatory protein6e-0856.2
NC_015660:1076159:108793410879341088275342Geobacillus thermoglucosidasius C56-YS93 chromosome, completehelix-turn-helix domain-containing protein9e-0855.8
NC_013205:526281:535213535213535704492Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, XRE family8e-0855.8
NC_021175:2063611:207187220718722072216345Streptococcus oligofermentans AS 1.3089, complete genomeCro/CI family transcriptional regulator8e-0855.8
NC_014657:2127500:214037221403722140905534Caldicellulosiruptor owensensis OL chromosome, complete genomehelix-turn-helix domain protein7e-0855.8
NC_003919:1716831:172547517254751725804330Xanthomonas axonopodis pv. citri str. 306, complete genometranscriptional regulator7e-0855.8
NC_013171:896802:898431898431899051621Anaerococcus prevotii DSM 20548, complete genometranscriptional regulator, XRE family9e-0855.5
NC_015519:1081539:108566910856691086064396Tepidanaerobacter sp. Re1 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0755.5
NC_009253:529494:536731536731537033303Desulfotomaculum reducens MI-1 chromosome, complete genomeXRE family transcriptional regulator1e-0755.5
NC_010999:1245239:125530312553031255641339Lactobacillus casei, complete genomeRepressor (Gp132 protein)2e-0754.7
NC_007644:280000:287262287262287648387Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, XRE family2e-0754.3
NC_015732:982774:9996799996791000284606Spirochaeta caldaria DSM 7334 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0754.3
NC_015589:2878000:287984128798412880455615Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0754.3
NC_016935:7512884:752068375206837520877195Paenibacillus mucilaginosus 3016 chromosome, complete genomeXRE family transcriptional regulator3e-0753.9
NC_015977:3011177:302804130280413028793753Roseburia hominis A2-183 chromosome, complete genomehypothetical protein3e-0753.9
NC_015690:7422911:743071274307127430906195Paenibacillus mucilaginosus KNP414 chromosome, complete genomeXRE family transcriptional regulator3e-0753.9
NC_012891:1277966:129143912914391292212774Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,hypothetical protein4e-0753.5
NC_000964:521975:530691530691531074384Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein5e-0753.1
NC_015975:923812:941399941399941818420Lactobacillus ruminis ATCC 27782 chromosome, complete genomehypothetical protein5e-0753.1
NC_009495:2479465:252016025201602520594435Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA-binding phage protein4e-0753.1
NC_015573:2463123:248983824898382490296459Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein7e-0752.8
NC_020272:2748733:279546227954622795836375Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein7e-0752.8
NC_019842:1172944:117596611759661176340375Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein7e-0752.8
NC_009513:870837:873129873129873464336Lactobacillus reuteri F275, complete genometranscriptional regulator, XRE family6e-0752.8
NC_015913:117966:118288118288118545258Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomehypothetical protein8e-0752.4
NC_009089:1093832:109383210938321094164333Clostridium difficile 630, complete genomeputative phage regulatory protein9e-0752.4
NC_012778:403962:424154424154424807654Eubacterium eligens ATCC 27750, complete genomehypothetical protein1e-0651.6
NC_017188:2221705:224299122429912243377387Bacillus amyloliquefaciens TA208 chromosome, complete genomeDNA-binding protein2e-0651.2
NC_017208:1831918:183596118359611836299339Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetranscriptional regulator2e-0651.2
NC_013853:2048867:206514420651442065569426Streptococcus mitis B6, complete genometranscriptional regulator2e-0650.8
NC_011772:1011220:101541510154151015864450Bacillus cereus G9842, complete genomehypothetical protein2e-0650.8
NC_010610:755000:763466763466763780315Lactobacillus fermentum IFO 3956, complete genomehypothetical protein3e-0650.8
NC_009328:293000:362637362637363419783Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein3e-0650.8
NC_009617:1897887:190150219015021901873372Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0650.4
NC_010001:69000:909309093091751822Clostridium phytofermentans ISDg, complete genometranscriptional regulator, XRE family3e-0650.4
NC_004722:1804788:180478818047881805132345Bacillus cereus ATCC 14579, complete genomeTranscriptional regulator, MerR family3e-0650.4
NC_009633:2592000:263151726315172631879363Alkaliphilus metalliredigens QYMF chromosome, complete genomehelix-turn-helix domain-containing protein4e-0650.1
NC_014319:587977:593128593128593592465Leuconostoc gasicomitatum LMG 18811, complete genomePbsX transcriptional repressor4e-0650.1
NC_013132:5942981:595278159527815953122342Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, XRE family5e-0650.1
NC_017294:115500:118873118873119088216Candidatus Arthromitus sp. SFB-mouse-Yit, complete genometranscriptional regulator5e-0650.1
NC_013132:5942981:596067259606725961016345Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, XRE family5e-0649.7
NC_020210:3246839:326198032619803262387408Geobacillus sp. GHH01, complete genometranscriptional regulator7e-0649.3
NC_020272:2692746:269463426946342694972339Bacillus amyloliquefaciens IT-45, complete genomeHTH-type transcriptional regulator6e-0649.3
NC_014976:684000:685892685892686242351Bacillus subtilis BSn5 chromosome, complete genomeputative Xre family transcriptional regulator6e-0649.3
NC_009253:3017280:302680730268073027181375Desulfotomaculum reducens MI-1 chromosome, complete genomeXRE family transcriptional regulator9e-0648.9
NC_013520:1638000:164038216403821640843462Veillonella parvula DSM 2008, complete genometranscriptional regulator, XRE family9e-0648.9
NC_014650:603500:617995617995618441447Geobacillus sp. Y4.1MC1 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0548.9