Pre_GI: BLASTP Hits

Some Help

Query: NC_009439:608500:621578 Pseudomonas mendocina ymp, complete genome

Start: 621578, End: 622426, Length: 849

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014121:5000069:502482850248285025670843Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein8e-64243
NC_012759:3529657:353190235319023532744843Escherichia coli BW2952 chromosome, complete genomeputative DNA processing protein5e-63241
NC_010473:3722571:374115337411533741995843Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA (exogenous) processing protein5e-63241
NC_010468:231000:247229247229248071843Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF5195e-63241
NC_009800:3685651:368789636878963688738843Escherichia coli HS, complete genomeDNA utilization protein YhiR5e-63241
NC_000913:3624826:364340836434083644250843Escherichia coli K12, complete genomepredicted DNA (exogenous) processing protein5e-63241
AC_000091:3976888:399418839941883995030843Escherichia coli W3110 DNA, complete genomepredicted DNA (exogenous) processing protein5e-63241
NC_006905:3717306:372177737217773722619843Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein7e-62237
NC_009801:3956917:395691739569173957759843Escherichia coli E24377A, complete genomeDNA utilization protein YhiR1e-61236
NC_010498:3838419:385681038568103857652843Escherichia coli SMS-3-5, complete genomeDNA utilization protein YhiR1e-61236
NC_011748:3983432:401019340101934011035843Escherichia coli 55989, complete genomeputative DNA (exogenous) processing protein1e-61236
NC_011751:4074586:409297740929774093819843Escherichia coli UMN026 chromosome, complete genomeputative DNA (exogenous) processing protein1e-61236
CP002516:246767:264366264366265208843Escherichia coli KO11, complete genomeprotein of unknown function DUF5191e-61236
CU928160:3709081:370908137090813709923843Escherichia coli IAI1 chromosome, complete genomeputative DNA (exogenous) processing protein1e-61236
CU928145:3983432:401019340101934011035843Escherichia coli 55989 chromosome, complete genomeputative DNA (exogenous) processing protein1e-61236
CP002185:3822470:384086538408653841707843Escherichia coli W, complete genomepredicted DNA (exogenous) processing protein1e-61236
NC_016902:246767:264366264366265208843Escherichia coli KO11FL chromosome, complete genomehypothetical protein1e-61236
NC_016822:3923908:394361839436183944460843Shigella sonnei 53G, complete genomeputative DNA processing protein1e-61236
NC_012967:3549880:357607535760753576917843Escherichia coli B str. REL606 chromosome, complete genomeputative DNA (exogenous) processing protein1e-61236
NC_012947:248000:264259264259265101843Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-61236
NC_011741:3709081:370908137090813709923843Escherichia coli IAI1 chromosome, complete genomeputative DNA (exogenous) processing protein1e-61236
NC_007613:3470314:349034534903453491187843Shigella boydii Sb227, complete genomehypothetical protein1e-61236
NC_013941:4249871:426828842682884269130843Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA utilization protein YhiR5e-61234
NC_008258:3581583:358158335815833582476894Shigella flexneri 5 str. 8401, complete genomehypothetical protein1e-60233
NC_017328:3655876:365587636558763656769894Shigella flexneri 2002017 chromosome, complete genomeDNA utilization protein YhiR1e-60233
NC_004741:4132056:415193541519354152777843Shigella flexneri 2a str. 2457T, complete genomehypothetical protein9e-61233
NC_004337:3590323:362107136210713621913843Shigella flexneri 2a str. 301, complete genomehypothetical protein9e-61233
NC_011415:3887997:389024238902423891084843Escherichia coli SE11 chromosome, complete genomehypothetical protein9e-61233
NC_002505:168532:190915190915191754840Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein5e-59228
NC_012668:442601:447232447232448071840Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein5e-59228
NC_016445:2593800:261618326161832617022840Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein5e-59228
NC_016944:168530:190925190925191764840Vibrio cholerae IEC224 chromosome I, complete sequenceDNA processing protein5e-59228
NC_015633:338000:353596353596354435840Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein1e-58226
NC_016513:689689:708267708267709112846Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completetyrosine recombinase XerD9e-57220
NC_013416:386301:404874404874405719846Aggregatibacter actinomycetemcomitans D11S-1, complete genomeOrfJ9e-57220
NC_016002:2946702:294759929475992948444846Pseudogulbenkiania sp. NH8B, complete genomehypothetical protein2e-52206
NC_008783:507939:526474526474527340867Bartonella bacilliformis KC583, complete genomeyhiR family protein1e-52206
NC_008570:4009762:401413940141394014993855Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeprotein involved in external DNA uptake1e-52206
NC_015424:748785:764847764847765701855Aeromonas veronii B565 chromosome, complete genomeprotein involved in external DNA uptake1e-52206
NC_009348:3819271:382162938216293822483855Aeromonas salmonicida subsp. salmonicida A449, complete genomeprotein involved in catabolism of external DNA8e-51200
NC_006677:2042387:206315320631532063992840Gluconobacter oxydans 621H, complete genomehypothetical protein1e-48193
NC_015186:1698000:171699417169941717815822Acidiphilium multivorum AIU301, complete genomehypothetical protein5e-48191
NC_009484:1627734:164673216467321647553822Acidiphilium cryptum JF-5 chromosome, complete genomehypothetical protein5e-48191
NC_009092:4337617:434981643498164350655840Shewanella loihica PV-4, complete genomeprotein of unknown function DUF5193e-46185
NC_015976:2900891:291906229190622919892831Sphingobium sp. SYK-6, complete genomehypothetical protein1e-41170
NC_010410:480518:484154484154485011858Acinetobacter baumannii AYE, complete genomehypothetical protein1e-40166
NC_010611:3413333:342882934288293429686858Acinetobacter baumannii ACICU, complete genomeProtein involved in catabolism of external DNA1e-40166
NC_009049:2131017:213283921328392133621783Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceprotein of unknown function DUF5192e-24113