Pre_GI: BLASTP Hits

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Query: NC_009439:4661102:4664388 Pseudomonas mendocina ymp, complete genome

Start: 4664388, End: 4664660, Length: 273

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:5174354:517986351798635180135273Pseudomonas denitrificans ATCC 13867, complete genomeoxidative damage protection protein2e-42171
NC_007645:1336227:135338813533881353657270Hahella chejuensis KCTC 2396, complete genomeFe-S cluster protector protein1e-23108
NC_010278:1918000:193715819371581937433276Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,hypothetical protein6e-23105
NC_009053:1942973:197557119755711975846276Actinobacillus pleuropneumoniae L20, complete genomeProbable Fe(2+)-trafficking protein6e-23105
NC_010939:1986263:200045420004542000729276Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeProbable Fe(2+)-trafficking protein6e-23105
NC_008782:1863853:186688218668821867154273Acidovorax sp. JS42, complete genomeFe(II) trafficking protein YggX1e-21102
NC_015276:632206:633425633425633700276Marinomonas mediterranea MMB-1 chromosome, complete genomeFe(2+)-trafficking protein4e-21100
NC_020211:4484817:448591444859144486186273Serratia marcescens WW4, complete genomeprotein that protects iron-sulfur proteins against oxidative damage1e-2098.6
NC_020541:3156500:315986831598683160146279Rhodanobacter sp. 2APBS1, complete genomeFe-S cluster protector protein2e-2097.8
NC_013508:275081:294342294342294614273Edwardsiella tarda EIB202, complete genomeputative Fe(2+)-trafficking protein3e-2097.4
NC_019940:2236630:225444822544482254720273Thioflavicoccus mobilis 8321 chromosome, complete genomeFe-S cluster protector protein3e-2097.1
NC_012962:3864000:386400038640003864272273Photorhabdus asymbiotica, complete genomehypothetical protein4e-2096.7
NC_013889:2603914:260845826084582608733276Thioalkalivibrio sp. K90mix chromosome, complete genomeFe(II) trafficking protein YggX5e-2096.3
NC_013166:194614:212489212489212764276Kangiella koreensis DSM 16069, complete genomeFe(II) trafficking protein YggX5e-2096.3
NC_012779:261438:277368277368277640273Edwardsiella ictaluri 93-146, complete genomeputative Fe(2+)9e-2095.5
NC_013592:956829:985236985236985508273Dickeya dadantii Ech586, complete genomeFe(II) trafficking protein YggX1e-1995.1
NC_015572:427732:432250432250432522273Methylomonas methanica MC09 chromosome, complete genomeFe(2+)-trafficking protein1e-1994.7
NC_011761:2641481:264372426437242644005282Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completehypothetical protein2e-1994.4
NC_014500:1066911:109748710974871097759273Dickeya dadantii 3937 chromosome, complete genomeiron-sulfur cluster protector protein4e-1993.6
NC_015061:3840463:384396138439613844233273Rahnella sp. Y9602 chromosome, complete genomeFe(II) trafficking protein YggX7e-1992.4
NC_016818:3851542:385568438556843855956273Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeFe-S cluster protector protein7e-1992.4
NC_017047:3907854:391135239113523911624273Rahnella aquatilis HX2 chromosome, complete genomeoxidative damage protection protein7e-1992.4
NC_011901:3072817:308748230874823087754273Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein9e-1992
NC_006155:3779381:379776637977663798038273Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein3e-1890.5
NC_010634:3692321:371074837107483711020273Yersinia pseudotuberculosis PB1/+, complete genomeFe(II) trafficking protein YggX3e-1890.5
NC_005810:3964468:396712739671273967399273Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein3e-1890.5
NC_010465:933488:936165936165936437273Yersinia pseudotuberculosis YPIII, complete genomeProtein-tyrosine-phosphatase3e-1890.5
NC_010159:138879:158544158544158816273Yersinia pestis Angola, complete genomeputative Fe(2+) trafficking protein YggX3e-1890.5
NC_009381:627685:630343630343630615273Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein3e-1890.5
NC_009708:986918:989701989701989973273Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein3e-1890.5
NC_020418:1397112:141944614194461419718273Morganella morganii subsp. morganii KT, complete genomePutative Fe(2+)-trafficking protein YggX8e-1889
NC_010513:1128000:114438211443821144699318Xylella fastidiosa M12 chromosome, complete genomehypothetical protein2e-1787.8
NC_008149:3529428:354777235477723548044273Yersinia pestis Nepal516, complete genomehypothetical protein2e-1787.4
NC_004088:3661601:367994636799463680218273Yersinia pestis KIM, complete genomehypothetical protein2e-1787.4
NC_008150:361224:366002366002366274273Yersinia pestis Antiqua, complete genomehypothetical protein2e-1787.4
NC_003143:1033500:105186810518681052140273Yersinia pestis CO92, complete genomehypothetical protein2e-1787.4
NC_017168:50391:531345313453406273Yersinia pestis A1122 chromosome, complete genomeoxidative damage protection protein2e-1787.4
NC_017265:854492:857151857151857423273Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,iron-sulfur cluster protector protein2e-1787.4
NC_010577:1087092:110493011049301105202273Xylella fastidiosa M23, complete genomeFe(II) trafficking protein YggX2e-1787.4
NC_004556:1076063:109504310950431095315273Xylella fastidiosa Temecula1, complete genomehypothetical protein2e-1787.4
NC_008789:1237969:124213612421361242408273Halorhodospira halophila SL1, complete genomeFe(II) trafficking protein YggX3e-1787
NC_002488:1812696:181415018141501814467318Xylella fastidiosa 9a5c, complete genomehypothetical protein5e-1786.3
NC_013525:1221604:126197612619761262293318Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeFe(II) trafficking protein YggX6e-1785.9
NC_014752:324832:326484326484326750267Neisseria lactamica ST-640, complete genomeFe(2+)-trafficking protein4e-1580.1
NC_011831:2728932:274696327469632747265303Chloroflexus aggregans DSM 9485, complete genomeFe(II) trafficking protein YggX3e-1477.4
NC_016631:5438477:544235554423555442627273Granulicella mallensis MP5ACTX8 chromosome, complete genomeFe(II) trafficking protein YggX4e-1373.6
NC_009523:1101214:112342611234261123713288Roseiflexus sp. RS-1 chromosome, complete genomehypothetical protein4e-1373.6
NC_014109:27500:319363193632166231Candidatus Riesia pediculicola USDA chromosome, complete genomehypothetical protein4e-1270.1