Pre_GI: BLASTP Hits

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Query: NC_009439:3770282:3770282 Pseudomonas mendocina ymp, complete genome

Start: 3770282, End: 3771748, Length: 1467

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1415962:1431627143162714331231497Pseudomonas syringae pv. syringae B728a, complete genomeextracellular solute-binding protein, family 3:SLT0740
NC_011901:1122357:1138977113897711403951419Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetransglycosylase6e-118424
NC_018697:618832:6342376342376356581422Cycloclasticus sp. P1 chromosome, complete genomeLytic transglycosylase catalytic1e-106387
NC_012912:1229333:1245047124504712465041458Dickeya zeae Ech1591, complete genomeLytic transglycosylase catalytic9e-97354
NC_010519:1684901:1687353168735316887921440Haemophilus somnus 2336 chromosome, complete genometransglycosylase8e-84311
NC_011741:2715246:2719529271952927209471419Escherichia coli IAI1 chromosome, complete genomeputative transglycosylase6e-81301
CU928160:2715246:2719529271952927209471419Escherichia coli IAI1 chromosome, complete genomeputative transglycosylase6e-81301
NC_008702:1432952:1445591144559114469791389Azoarcus sp. BH72, complete genomeconserved hypothetical protein2e-72273
NC_020126:5849483:5854845585484558570492205Myxococcus stipitatus DSM 14675, complete genomeglutamine ABC transporter substrate-binding protein3e-52206
NC_013222:817686:8574128574128588721461Robiginitalea biformata HTCC2501, complete genomeextracellular solute-binding protein, family 32e-48194
NC_015160:2521849:2538245253824525396331389Odoribacter splanchnicus DSM 20712 chromosome, complete genomeextracellular solute-binding protein family 35e-44179
NC_020181:3585898:3608834360883436104591626Enterobacter aerogenes EA1509E, complete genomeTransglycosylase, Slt family2e-29130
NC_021066:3769405:3785144378514437866941551Raoultella ornithinolytica B6, complete genometransglycosylase3e-28126
NC_019960:801589:8223348223348235751242Prevotella dentalis DSM 3688 chromosome 1, complete sequenceputative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein2e-20100
NC_014219:1736000:175182117518211752510690Bacillus selenitireducens MLS10 chromosome, complete genomeLytic transglycosylase catalytic2e-1068.2
NC_016816:1912366:194686119468611947661801Pantoea ananatis LMG 5342, complete genomeABC transporter substrate-binding protein3e-1067
NC_008800:2695977:271113927111392711939801Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,cystine transporter subunit2e-0964.3
NC_004557:558500:576911576911577729819Clostridium tetani E88, complete genomecystine/glutamine-binding periplasmic protein4e-0963.2
NC_007604:41495:750917509175852762Synechococcus elongatus PCC 7942, complete genomeextracellular solute-binding protein, family 35e-0963.2
NC_000964:2146000:2248350224835022552076858Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein5e-0962.8
NC_009092:4337617:435105243510524351783732Shewanella loihica PV-4, complete genomeLytic transglycosylase, catalytic7e-0962.4
NC_007517:2165657:217968121796812180292612Geobacter metallireducens GS-15, complete genomeLytic transglycosylase, catalytic8e-0962.4
NC_007622:2399347:242361524236152424394780Staphylococcus aureus RF122, complete genomeextracellular amino acid binding ABC transporter2e-0861.2
NC_007644:1638083:164380416438041644424621Moorella thermoacetica ATCC 39073, complete genomeLytic transglycosylase, catalytic3e-0860.5
NC_016514:2950860:295757829575782958378801Enterobacter cloacae EcWSU1 chromosome, complete genomecystine-binding periplasmic protein3e-0860.5
NC_015320:743983:761388761388762212825Archaeoglobus veneficus SNP6 chromosome, complete genomeABC transporter periplasmic subunit family 33e-0860.1
NC_009483:2854500:287564628756462876242597Geobacter uraniireducens Rf4 chromosome, complete genomelytic transglycosylase3e-0860.1
NC_012880:3645304:364746736474673648303837Dickeya dadantii Ech703, complete genomeextracellular solute-binding protein family 34e-0859.7
NC_014376:3671441:368650836865083687230723Clostridium saccharolyticum WM1 chromosome, complete genomeLytic transglycosylase catalytic5e-0859.7
NC_014121:3627588:3644135364413536459041770Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein6e-0859.3
NC_014972:544146:547516547516548247732Desulfobulbus propionicus DSM 2032 chromosome, complete genomelytic transglycosylase catalytic1e-0758.5
NC_009664:533021:5479845479845490901107Kineococcus radiotolerans SRS30216, complete genomeLytic transglycosylase catalytic1e-0758.5
NC_013093:2599591:259959125995912600574984Actinosynnema mirum DSM 43827, complete genomeLytic transglycosylase catalytic1e-0758.2
NC_008577:1015419:102816310281631028897735Shewanella sp. ANA-3 chromosome 1, complete sequenceextracellular solute-binding protein, family 31e-0758.2
NC_017218:1166844:118298111829811183829849Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeABC transporter substrate-binding protein1e-0758.2
NC_016627:793583:793583793583794260678Clostridium clariflavum DSM 19732 chromosome, complete genomelytic murein transglycosylase2e-0758.2
NC_009480:2932108:295235329523532953201849Clavibacter michiganensis subsp. michiganensis NCPPB 382, completeputative polar amino acid ABC transporter,substrate-binding protein2e-0757.8
NC_010814:2217153:224462722446272245265639Geobacter lovleyi SZ, complete genomeLytic transglycosylase catalytic2e-0757.8
NC_015425:34861:513965139652241846Clostridium botulinum BKT015925 chromosome, complete genomeamino acid ABC transporter substrate-binding protein3e-0757.4
NC_009792:4017510:4017510401751040185951086Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0757.4
NC_008253:3122148:3122148312214831232301083Escherichia coli 536, complete genomemembrane-bound lytic murein transglycosylase C precursor3e-0757
NC_009715:1202242:120549012054901206356867Campylobacter curvus 525.92 chromosome, complete genomeacriflavine resistance protein4e-0756.6
NC_018870:2232857:224787822478782248714837Thermacetogenium phaeum DSM 12270 chromosome, complete genomeglutamine-binding periplasmic protein GlnH4e-0756.6
NC_012779:610509:6105096105096124371929Edwardsiella ictaluri 93-146, complete genomesoluble lytic murein transglycosylase6e-0756.2
NC_011149:3187022:3187022318702231881071086Salmonella enterica subsp. enterica serovar Agona str. SL483,membrane-bound lytic murein transglycosylase C6e-0756.2
NC_006511:3079512:3079512307951230805971086Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCmembrane-bound lytic murein transglycosylase C7e-0755.8
NC_011147:3075186:3075186307518630762711086Salmonella enterica subsp. enterica serovar Paratyphi A strmurein transglycosylase C7e-0755.8
NC_004631:3112043:3112043311204331131281086Salmonella enterica subsp. enterica serovar Typhi Ty2, completemembrane-bound lytic murein transglycosylase C7e-0755.8
NC_003198:3126548:3126548312654831276331086Salmonella enterica subsp. enterica serovar Typhi str. CT18,membrane-bound lytic murein transglycosylase C7e-0755.8
NC_016832:3100683:3100683310068331017681086Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Membrane-bound lytic murein transglycosylase C7e-0755.8
NC_011969:3879412:388082338808233881602780Bacillus cereus Q1 chromosome, complete genomeamino acid ABC transporter substrate-binding protein1e-0655.5
NC_012918:1814000:1823304182330418264473144Geobacter sp. M21 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase1e-0655.1
NC_014500:1066911:1096350109635010974321083Dickeya dadantii 3937 chromosome, complete genomemembrane-bound lytic murein transglycosylase C1e-0655.1
NC_005957:3975192:397767239776723978451780Bacillus thuringiensis serovar konkukian str. 97-27, completeamino acid ABC transporter, amino acid-binding protein1e-0655.1
NC_008600:3976045:397745639774563978235780Bacillus thuringiensis str. Al Hakam, complete genomeamino acid ABC transporter, amino acid-binding protein1e-0655.1
NC_011773:3982008:398341939834193984198780Bacillus cereus AH820 chromosome, complete genomeamino acid ABC transporter amino acid-binding protein1e-0655.1
NC_021175:1291707:131353213135321314398867Streptococcus oligofermentans AS 1.3089, complete genomeputative periplasmic solute-binding transport protein2e-0654.7
NC_009436:2685910:270448927044892705289801Enterobacter sp. 638, complete genomecystine transporter subunit2e-0654.7
NC_015428:823420:8399038399038420502148Lactobacillus buchneri NRRL B-30929 chromosome, complete genomepolar amino acid ABC transporter inner membrane subunit2e-0654.7
NC_014972:137184:158025158025158633609Desulfobulbus propionicus DSM 2032 chromosome, complete genomelytic transglycosylase catalytic1e-0654.7
NC_010184:4021688:402238440223844023163780Bacillus weihenstephanensis KBAB4, complete genomeextracellular solute-binding protein family 32e-0654.3
NC_013592:956829:9840999840999851811083Dickeya dadantii Ech586, complete genomeLytic transglycosylase catalytic2e-0654.3
NC_017179:281069:299909299909300577669Clostridium difficile BI1, complete genometransglycosylase2e-0654.3
NC_009012:3224000:323867632386763239362687Clostridium thermocellum ATCC 27405, complete genomeLytic transglycosylase, catalytic2e-0653.9
NC_013508:275081:2932152932152942941080Edwardsiella tarda EIB202, complete genomemurein transglycosylase C4e-0653.5
NC_013792:109203:1174391174391196102172Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequenceSPbeta phage protein; lytic transglycosylase4e-0653.5
NC_008309:190550:214337214337215119783Haemophilus somnus 129PT, complete genomeamino acid ABC transporter, substrate-binding4e-0653.5
NC_020211:4484817:4486250448625044873261077Serratia marcescens WW4, complete genomemembrane-bound lytic murein transglycosylase C3e-0653.5
NC_013202:1620753:162075316207531621529777Halomicrobium mukohataei DSM 12286, complete genomeextracellular solute-binding protein family 35e-0653.1
NC_015061:3840463:3844310384431038453891080Rahnella sp. Y9602 chromosome, complete genomelytic transglycosylase catalytic5e-0653.1
NC_016818:3851542:3856033385603338571121080Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completelytic murein transglycosylase5e-0653.1
NC_020418:1397112:1418300141830014194151116Morganella morganii subsp. morganii KT, complete genomeMembrane-bound lytic murein transglycosylase C precursor5e-0653.1
NC_014377:1546124:154975815497581550594837Thermosediminibacter oceani DSM 16646 chromosome, complete genomeextracellular solute-binding protein family 34e-0653.1
NC_008593:37456:519445194452786843Clostridium novyi NT, complete genomeamino acid ABC transporter, substrate-binding protein4e-0653.1
NC_007759:1571425:157745515774551578108654Syntrophus aciditrophicus SB, complete genomesoluble lytic murein transglycosylase4e-0653.1
NC_014622:5553628:555362855536285554437810Paenibacillus polymyxa SC2 chromosome, complete genomeamino acid ABC transporter amino acid-binding protein/permease, his/glu/gln/arg/opine family5e-0652.8
NC_010519:71365:909109091091692783Haemophilus somnus 2336 chromosome, complete genomeextracellular solute-binding protein6e-0652.8
NC_009483:5113729:512062851206285121383756Geobacter uraniireducens Rf4 chromosome, complete genomelytic transglycosylase7e-0652.4