Pre_GI: BLASTP Hits

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Query: NC_009092:2902171:2928413 Shewanella loihica PV-4, complete genome

Start: 2928413, End: 2928712, Length: 300

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008322:2983951:300494630049463005311366Shewanella sp. MR-7, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein8e-1682.4
NC_013416:1429881:143003814300381430367330Aggregatibacter actinomycetemcomitans D11S-1, complete genomeComE operon protein 12e-1478.2
NC_009656:1994392:202881820288182029141324Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein3e-1373.6
NC_014752:324832:335935335935336234300Neisseria lactamica ST-640, complete genomeDNA transport competence protein6e-1372.8
NC_008767:1888950:190706619070661907530465Neisseria meningitidis FAM18, complete genomeputative DNA transport competence protein6e-1372.8
NC_002516:3519000:352416135241613524490330Pseudomonas aeruginosa PAO1, complete genomehypothetical protein7e-1372.8
NC_014541:1231021:123408112340811234365285Ferrimonas balearica DSM 9799 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein1e-1168.6
NC_013173:3679326:368153736815373681842306Desulfomicrobium baculatum DSM 4028, complete genome1e-1168.2
NC_015497:1287877:133541513354151335723309Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein2e-1167.8
NC_009512:4375452:437890843789084379243336Pseudomonas putida F1, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein2e-1167.4
NC_007575:319119:338582338582338833252Sulfurimonas denitrificans DSM 1251, complete genomehypothetical protein3e-1167.4
NC_007492:4563981:456685345668534567188336Pseudomonas fluorescens PfO-1, complete genomeCompetence protein ComEA helix-hairpin-helix region6e-1166.2
NC_004757:1021355:102587410258741026236363Nitrosomonas europaea ATCC 19718, complete genomeputative DNA transport competence protein, ComEA7e-1165.9
NC_020209:997385:102935310293531029685333Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-1065.5
NC_007614:2517226:252214225221422522444303Nitrosospira multiformis ATCC 25196 chromosome 1, completeCompetence protein ComEA helix-hairpin-helix region1e-1065.1
NC_007645:2408125:243129424312942431599306Hahella chejuensis KCTC 2396, complete genomeDNA uptake protein and related DNA-binding protein3e-1063.9
NC_012785:20454:420894208942883795Kosmotoga olearia TBF 19.5.1, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein4e-1063.2
NC_020134:845164:846338846338846811474Clostridium stercorarium subsp. stercorarium DSM 8532, completecompetence protein ComEA helix-hairpin-helix repeat region6e-1063.2
NC_017986:1128879:113550411355041135854351Pseudomonas putida ND6 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein7e-1062.8
NC_015873:1557999:157857115785711579095525Megasphaera elsdenii DSM 20460, complete genomeComEA protein7e-1062.4
NC_008599:596849:609772609772610176405Campylobacter fetus subsp. fetus 82-40, complete genomehypothetical protein1e-0962
NC_013739:3006719:302441630244163025108693Conexibacter woesei DSM 14684, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein2e-0961.6
NC_009828:1530732:154122115412211541763543Thermotoga lettingae TMO, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein1e-0961.6
NC_015672:2236000:224043822404382240698261Flexistipes sinusarabici DSM 4947 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein2e-0960.8
NC_012660:1804610:183339718333971833747351Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein3e-0960.5
NC_004129:4993974:500111650011165001445330Pseudomonas fluorescens Pf-5, complete genomecompetence protein comEA4e-0960.1
NC_016012:396910:405710405710406408699Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeputative comE operon protein 15e-0959.7
NC_010999:1381497:1383258138325813854352178Lactobacillus casei, complete genomeTranscription accessory protein8e-0959.3
NC_012559:2353236:236990323699032370388486Laribacter hongkongensis HLHK9, complete genomeProbable DNA transport competence protein7e-0959.3
NC_014623:4788768:480662248066224807038417Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeComE protein4e-0856.6
NC_015656:3232809:3234372323437232369662595Frankia symbiont of Datisca glomerata chromosome, complete genomeTex-like protein5e-0856.6
NC_014220:1732254:173468217346821735299618Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein6e-0856.2
NC_006370:166000:1847151847151870932379Photobacterium profundum SS9 chromosome 1, complete sequencehypothetical protein4e-0753.5
NC_018645:3719302:373589137358913736160270Desulfobacula toluolica Tol2, complete genomehypothetical protein6e-0753.1
NC_009663:89224:107745107745108080336Sulfurovum sp. NBC37-1, complete genomeDNA uptake protein5e-0753.1
NC_009052:144619:1560051560051583682364Shewanella baltica OS155, complete genomeRNA binding S1 domain protein1e-0652
NC_006361:1547034:1547034154703415486321599Nocardia farcinica IFM 10152, complete genomeputative DNA-binding protein1e-0651.6
NC_010617:1467000:1472965147296514739841020Kocuria rhizophila DC2201, complete genomeputative DNA-binding protein1e-0651.6
NC_013410:2691437:2714501271450127168942394Fibrobacter succinogenes subsp. succinogenes S85 chromosome,Tex-like protein1e-0651.6
NC_003155:6667928:6666768666676866679311164Streptomyces avermitilis MA-4680, complete genomeDNA-binding protein2e-0651.2
NC_012778:403962:4039624039624062532292Eubacterium eligens ATCC 27750, complete genomehypothetical protein2e-0651.2
NC_008344:669498:6731556731556753772223Nitrosomonas eutropha C91, complete genomeRNA binding S1 domain protein3e-0650.8
NC_016932:1414226:1427254142725414295872334Corynebacterium pseudotuberculosis 316 chromosome, complete genometranscriptional accessory protein3e-0650.4
NC_017300:1426975:1440038144003814423412304Corynebacterium pseudotuberculosis 1002 chromosome, completetranscriptional accessory protein4e-0650.4
NC_014329:1407880:1442680144268014449832304Corynebacterium pseudotuberculosis FRC41 chromosome, completehypothetical protein4e-0650.4
NC_017301:1425293:1442426144242614447292304Corynebacterium pseudotuberculosis C231 chromosome, completetranscriptional accessory protein4e-0650.4
NC_015978:412856:4345234345234367062184Lactobacillus sanfranciscensis TMW 1.1304 chromosome, completehypothetical protein4e-0650.4
NC_013790:2865843:2883221288322128854072187Methanobrevibacter ruminantium M1 chromosome, complete genomeRNA-binding S1 domain-containing protein5e-0650.1
NC_015416:2113949:2116359211635921185002142Methanosaeta concilii GP-6 chromosome, complete genomeS1 RNA binding domain-containing protein6e-0649.7
NC_003454:677699:7000737000737022442172Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeTranscription accessory protein (S1 RNA binding domain)6e-0649.7
NC_014008:1463795:1466744146674414690202277Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeTex-like protein protein6e-0649.7
NC_007759:1571425:157678615767861577400615Syntrophus aciditrophicus SB, complete genomeDNA-binding protein, ComEA family5e-0649.7
NC_014371:177536:2087352087352114672733Prevotella melaninogenica ATCC 25845 chromosome chromosome II,Tex-like protein N-terminal domain protein8e-0649.3
NC_013855:670285:6717936717936741472355Azospirillum sp. B510 plasmid pAB510a, complete sequenceS1 RNA-binding domain-containing protein9e-0648.9
NC_013730:834500:8352098352098373502142Spirosoma linguale DSM 74, complete genomeTex-like protein protein-like protein9e-0648.9