Pre_GI: BLASTP Hits

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Query: NC_009092:2282437:2323065 Shewanella loihica PV-4, complete genome

Start: 2323065, End: 2324252, Length: 1188

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016112:1735044:1758317175831717594921176Methylomicrobium alcaliphilum chromosome, complete genomeEfflux transporter RND family, MFP subunit6e-55214
NC_007645:1443296:1459291145929114604991209Hahella chejuensis KCTC 2396, complete genomeMembrane-fusion protein3e-52206
NC_015572:2713599:2732004273200427331791176Methylomonas methanica MC09 chromosome, complete genomeRND family efflux transporter MFP subunit2e-51202
NC_011768:1889853:1888612188861218898561245Desulfatibacillum alkenivorans AK-01, complete genomeefflux transporter, RND family, MFP subunit6e-41168
NC_014844:1270618:1269342126934212706251284Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeRND family efflux transporter MFP subunit7e-40165
NC_016745:2028424:2059611205961120607681158Oceanimonas sp. GK1 chromosome, complete genomemembrane-fusion protein8e-33141
NC_018691:4619245:4628501462850146296221122Alcanivorax dieselolei B5 chromosome, complete genomePutative H+-transporting two-sector ATPase, beta subunit1e-29130
NC_013939:1927424:1930510193051019316911182Deferribacter desulfuricans SSM1, complete genomeRND efflux system membrane fusion protein9e-26118
NC_013501:990022:9939139939139951061194Rhodothermus marinus DSM 4252, complete genomeefflux transporter, RND family, MFP subunit2e-1170.9
NC_011296:1542835:1549918154991815510631146Thermodesulfovibrio yellowstonii DSM 11347, complete genomeacriflavine resistance protein A1e-1068.2
NC_015682:205900:2138512138512149631113Thermodesulfobacterium sp. OPB45 chromosome, complete genomeRND family efflux transporter MFP subunit3e-1066.6
NC_004631:799810:8304488304488316891242Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative efflux system protein7e-1065.5
NC_012125:1632150:1665216166521616664571242Salmonella enterica subsp. enterica serovar Paratyphi C strainmultidrug efflux system subunit MdtA7e-1065.5
NC_016832:799764:8304028304028316431242Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Multidrug resistance protein mdtA7e-1065.5
NC_017075:1674758:1698680169868016998701191Rubrivivax gelatinosus IL144, complete genomemultidrug resistance protein MexA9e-1065.1
NC_008570:3220539:3273334327333432745271194Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeacriflavin resistance protein A2e-0963.9
NC_015424:3112637:3151475315147531526681194Aeromonas veronii B565 chromosome, complete genomeAcriflavin resistance protein A2e-0963.9
NC_009615:2039964:2057024205702420581391116Parabacteroides distasonis ATCC 8503 chromosome, complete genomecation efflux pump3e-0963.5
NC_015663:4950000:5015599501559950167951197Enterobacter aerogenes KCTC 2190 chromosome, complete genomemultidrug efflux system subunit MdtA2e-0963.5
NC_013456:2528284:2528284252828425294231140Vibrio sp. Ex25 chromosome 1, complete genomemembrane fusion protein of RND family multidrug efflux pump2e-0963.5
NC_007484:1229899:1231994123199412331001107Nitrosococcus oceani ATCC 19707, complete genomeSecretion protein HlyD3e-0963.2
NC_014121:3453815:3469645346964534708471203Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completemultidrug efflux system subunit MdtA3e-0963.2
NC_015186:132567:1325671325671337511185Acidiphilium multivorum AIU301, complete genomeHlyD family secretion protein6e-0962.4
NC_009484:98250:1013221013221025061185Acidiphilium cryptum JF-5 chromosome, complete genomeRND family efflux transporter MFP subunit6e-0962.4
NC_011296:102650:1225931225931237531161Thermodesulfovibrio yellowstonii DSM 11347, complete genomeefflux transporter, RND family, MFP subunit6e-0962.4
NC_011988:1036618:1039797103979710410321236Agrobacterium vitis S4 chromosome 2, complete genomeacriflavin resistance protein A5e-0962.4
NC_009715:167513:1836061836061847451140Campylobacter curvus 525.92 chromosome, complete genomeCmeA7e-0962
NC_009720:813157:8212248212248223871164Xanthobacter autotrophicus Py2, complete genomeRND family efflux transporter MFP subunit9e-0961.6
NC_014118:2417838:2419332241933224205521221Burkholderia sp. CCGE1002 chromosome chromosome 2, completeefflux transporter, RND family, MFP subunit1e-0861.2
NC_010002:528529:5317005317005329921293Delftia acidovorans SPH-1, complete genomeefflux transporter, RND family, MFP subunit1e-0861.2
NC_010725:5491491:5494730549473054960551326Methylobacterium populi BJ001, complete genomeefflux transporter, RND family, MFP subunit2e-0860.8
NC_012850:3454270:3473334347333434745451212Rhizobium leguminosarum bv. trifolii WSM1325, complete genomeefflux transporter, RND family, MFP subunit2e-0860.5
NC_013859:9500:1033710337115391203Azospirillum sp. B510 plasmid pAB510e, complete sequenceefflux transporter2e-0860.5
NC_010002:5691968:5695306569530656965891284Delftia acidovorans SPH-1, complete genomeefflux transporter, RND family, MFP subunit2e-0860.5
NC_008380:4078670:4098266409826640994771212Rhizobium leguminosarum bv. viciae 3841, complete genomeputative RND family transporter4e-0859.7
NC_015968:3023048:3038853303885330401001248Enterobacter asburiae LF7a chromosome, complete genomeMultidrug resistance protein mdtA4e-0859.7
NC_013009:122000:1318141318141329051092Neorickettsia risticii str. Illinois, complete genomeefflux transporter, RND family, MFP subunit5e-0859.3
NC_009850:1011293:103092710309271031640714Arcobacter butzleri RM4018, complete genomeconserved hypothetical protein6e-0858.9
NC_011184:2840713:2841298284129828424041107Vibrio fischeri MJ11 chromosome I, complete sequenceperiplasmic component of efflux system7e-0858.9
NC_009615:4031335:4031335403133540324381104Parabacteroides distasonis ATCC 8503 chromosome, complete genomemembrane fusion protein8e-0858.5
NC_017030:8551795:8557187855718785583651179Corallococcus coralloides DSM 2259 chromosome, complete genomeRND family efflux transporter MFP subunit8e-0858.5
NC_011894:585637:6008646008646020091146Methylobacterium nodulans ORS 2060, complete genomeefflux transporter, RND family, MFP subunit7e-0858.5
NC_009659:1129066:1150710115071011518131104Janthinobacterium sp. Marseille chromosome, complete genomecomponent of multidrug efflux system9e-0858.2
NC_018721:1027396:1039224103922410403811158Psychroflexus torquis ATCC 700755 chromosome, complete genomecation/multidrug efflux membrane fusion protein, AcrA family1e-0758.2
NC_009439:918534:9381149381149392651152Pseudomonas mendocina ymp, complete genomeRND family efflux transporter MFP subunit1e-0758.2
NC_009614:2431005:2434060243406024351361077Bacteroides vulgatus ATCC 8482 chromosome, complete genomemembrane fusion protein1e-0757.8
NC_013037:5587802:5607045560704556081961152Dyadobacter fermentans DSM 18053, complete genomeefflux transporter, RND family, MFP subunit1e-0757.8
NC_013892:2689645:2708078270807827093191242Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-0757.4
NC_011184:2369662:2391237239123723923491113Vibrio fischeri MJ11 chromosome I, complete sequenceperiplasmic component of efflux system3e-0757
NC_010125:148500:1538341538341548531020Gluconacetobacter diazotrophicus PAl 5, complete genomeputative secretion protein, HlyD-family2e-0757
NC_017187:750363:7673707673707684281059Arcobacter butzleri ED-1, complete genomemultidrug efflux RND membrane fusion protein2e-0757
NC_010994:3666651:3686151368615136873621212Rhizobium etli CIAT 652, complete genomeprobable protein secretion protein, HlyD family2e-0757
NC_007761:3564449:3584663358466335858741212Rhizobium etli CFN 42, complete genomeprobable protein secretion protein, HlyD family2e-0757
NC_009512:3251545:3254778325477832559831206Pseudomonas putida F1, complete genomeefflux transporter, RND family, MFP subunit3e-0756.6
NC_017192:2505369:251489025148902515612723Arcobacter sp. L, complete genomehypothetical protein4e-0756.2
NC_017192:1799000:181053118105311811253723Arcobacter sp. L, complete genomehypothetical protein4e-0756.2
NC_019907:1060005:1072860107286010740351176Liberibacter crescens BT-1 chromosome, complete genomeprotein secretion protein, HlyD family6e-0755.8
NC_003228:3669151:3679463367946336805241062Bacteroides fragilis NCTC 9343, complete genomeputative conserved lipoprotein5e-0755.8
NC_016776:3714642:3724954372495437260151062Bacteroides fragilis 638R, complete genomeputative conserved lipoprotein5e-0755.8
NC_006347:3760447:3770766377076637718181053Bacteroides fragilis YCH46, complete genomeputative multidrug resistance protein5e-0755.8
NC_017192:1063955:1083429108342910844871059Arcobacter sp. L, complete genomemultidrug efflux RND membrane fusion protein7e-0755.5
NC_004663:1499145:1509808150980815110371230Bacteroides thetaiotaomicron VPI-5482, complete genomeperiplasmic component of efflux system8e-0755.5
NC_008577:4611431:4618877461887746199621086Shewanella sp. ANA-3 chromosome 1, complete sequenceefflux transporter, RND family, MFP subunit1e-0655.1
NC_002939:1021297:1021297102129710224691173Geobacter sulfurreducens PCA, complete genomeefflux transporter, RND family, MFP subunit1e-0655.1
NC_015183:2483653:2500945250094525021471203Agrobacterium sp. H13-3 chromosome, complete genomeacriflavin resistance protein A8e-0755.1
NC_014758:579741:5960655960655972911227Calditerrivibrio nitroreducens DSM 19672 chromosome, completeefflux transporter, rnd family, mfp subunit1e-0654.7
NC_015376:662844:6643396643396656881350Burkholderia gladioli BSR3 chromosome chromosome 2, completesecretion protein HlyD1e-0654.7
NC_016609:5986500:6008487600848760096141128Niastella koreensis GR20-10 chromosome, complete genomeRND family efflux transporter MFP subunit2e-0654.3
NC_003228:2245181:2255859225585922570821224Bacteroides fragilis NCTC 9343, complete genomeputative HlyD family secretion protein1e-0654.3
NC_006347:2190000:2199605219960522008281224Bacteroides fragilis YCH46, complete genomeperiplasmic component of efflux system1e-0654.3
NC_016776:2237404:2248295224829522495181224Bacteroides fragilis 638R, complete genomeputative HlyD family secretion protein1e-0654.3
NC_010939:2085000:2093467209346720946211155Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeprobable macrolide-specific efflux protein2e-0653.9
NC_010278:1989500:1997995199799519991581164Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,hypothetical protein2e-0653.9
NC_006831:821000:8405508405508416411092Ehrlichia ruminantium str. Gardel, complete genomehypothetical protein2e-0653.9
NC_016818:1795576:1840047184004718411381092Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeRND family efflux transporter, MFP subunit3e-0653.5
NC_008027:2397255:2404188240418824054291242Pseudomonas entomophila L48, complete genomemultidrug efflux RND membrane fusion protein MexE3e-0653.5
NC_005295:845000:8645698645698656601092Ehrlichia ruminantium str. Welgevonden, complete genomeputative secretion protein3e-0653.1
NC_014933:979063:9851959851959862981104Bacteroides helcogenes P 36-108 chromosome, complete genomeefflux transporter, RND family, MFP subunit3e-0653.1
NC_014029:3171627:3200515320051532018491335Yersinia pestis Z176003 chromosome, complete genomeHlyD family secretion protein5e-0652.8
NC_021172:3655206:3658378365837836595921215Hyphomicrobium denitrificans 1NES1, complete genomeRND family efflux transporter MFP subunit5e-0652.8
NC_003062:2506959:2520791252079125220231233Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein5e-0652.8
NC_007798:112840:1206791206791217251047Neorickettsia sennetsu str. Miyayama, complete genomeefflux transporter, RND family, MFP subunit5e-0652.8
NC_003304:2507000:2520934252093425221361203Agrobacterium tumefaciens str. C58 chromosome circular, completeacriflavin resistance protein A4e-0652.8
NC_017075:1970168:197235719723571973289933Rubrivivax gelatinosus IL144, complete genomesecretion protein HlyD family protein4e-0652.8
NC_014837:1873020:187712118771211877978858Pantoea sp. At-9b chromosome, complete genomesecretion protein HlyD family protein5e-0652.4
NC_011365:1053178:1067478106747810685481071Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeRND family efflux transporter MFP subunit5e-0652.4
NC_015177:2972701:2992043299204329931131071Pedobacter saltans DSM 12145 chromosome, complete genomeefflux transporter, RND family, MFP subunit6e-0652.4
NC_010814:190673:2077552077552087981044Geobacter lovleyi SZ, complete genomeefflux transporter, RND family, MFP subunit7e-0652
NC_012881:1062629:1070125107012510711651041Desulfovibrio salexigens DSM 2638, complete genomeefflux transporter, RND family, MFP subunit8e-0652
NC_020211:996497:1017106101710610182271122Serratia marcescens WW4, complete genomeRND family efflux transporter MFP subunit8e-0652