Pre_GI Gene

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Host: NC_003304 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003304:2507000 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
250707225085081437two component sensor kinaseQuickGO ontologyBLASTP
25085052509179675two component response regulatorQuickGO ontologyBLASTP
25093292509949621transcriptional regulator TetR familyQuickGO ontologyBLASTP
251010725121432037N-methylproline demethylaseQuickGO ontologyBLASTP
2512232251231180tRNA-MetQuickGO ontology
25125472512669123SSU 5S ribosomal RNAQuickGO ontologyBLASTP
25127882512997210hypothetical proteinBLASTP
251330025155562257SSU 23S ribosomal RNAQuickGO ontologyBLASTP
25156532516042390hypothetical proteinBLASTP
25162782516493216hypothetical protein
2516509251658779tRNA-AlaQuickGO ontology
2516643251672280tRNA-IleQuickGO ontology
251704425185351492SSU 16S ribosomal RNAQuickGO ontologyBLASTP
25191212520071951phosphoribosylaminoimidazole-succinocarboxamide synthaseQuickGO ontologyBLASTP
25200752520734660transcriptional regulator TetR familyQuickGO ontologyBLASTP
252093425221361203acriflavin resistance protein AQuickGO ontologyBLASTP
252219025252793090acriflavin resistance protein BQuickGO ontologyBLASTP
252542925268831455nodulation protein T precursorQuickGO ontologyBLASTP
25270042527573570elongation factor PQuickGO ontologyBLASTP
252782525288891065lysyl-tRNA synthetaseQuickGO ontologyBLASTP
252885925299501092L-lysine 23-aminomutaseQuickGO ontologyBLASTP
25299462530131186hypothetical protein