Pre_GI: BLASTP Hits

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Query: NC_008262:1835613:1845145 Clostridium perfringens SM101, complete genome

Start: 1845145, End: 1845420, Length: 276

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:2157713:217109721710972171372276Clostridium perfringens ATCC 13124, complete genomePRC-barrel domain protein9e-44175
NC_020291:1464500:147992014799201480201282Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomesporulation protein, YlmC/YmxH family2e-28124
NC_014328:1405484:142172414217241421996273Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein2e-2097.4
NC_010520:2585014:260350526035052603777273Clostridium botulinum A3 str. Loch Maree, complete genomePRC-barrel domain protein4e-2096.7
NC_012563:2680246:271526327152632715535273Clostridium botulinum A2 str. Kyoto, complete genomePRC-barrel domain protein4e-2096.7
NC_010516:2511035:252897425289742529246273Clostridium botulinum B1 str. Okra, complete genomePRC-barrel domain protein4e-2096.7
NC_009495:2524000:254075125407512541023273Clostridium botulinum A str. ATCC 3502 chromosome, complete genomePRC-barrel domain-containing protein4e-2096.7
NC_009697:2394826:241277424127742413046273Clostridium botulinum A str. ATCC 19397 chromosome, completePRC-barrel domain-containing protein4e-2096.7
NC_009698:2367171:238511923851192385391273Clostridium botulinum A str. Hall chromosome, complete genomePRC-barrel domain-containing protein4e-2096.7
NC_012658:2584355:259894725989472599219273Clostridium botulinum Ba4 str. 657 chromosome, complete genomePRC-barrel domain-containing protein4e-2096.7
NC_017297:2575306:258962825896282589900273Clostridium botulinum F str. 230613 chromosome, complete genomeYlmC/YmxH family sporulation protein6e-2095.9
NC_009699:2576500:258948825894882589760273Clostridium botulinum F str. Langeland chromosome, complete genomePRC-barrel domain-containing protein6e-2095.9