Pre_GI: BLASTP Hits

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Query: NC_008258:1750964:1772792 Shigella flexneri 5 str. 8401, complete genome

Start: 1772792, End: 1774111, Length: 1320

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007613:1533024:1558078155807815593971320Shigella boydii Sb227, complete genomehypothetical protein0904
NC_020063:2230000:2269170226917022704861317Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein0711
NC_013716:1618249:1631067163106716324431377Citrobacter rodentium ICC168, complete genomeputative lipoprotein0687
NC_021066:1393750:1413020141302014144261407Raoultella ornithinolytica B6, complete genomeglycoside hydrolase0686
NC_012917:2362725:2367221236722123685161296Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein0674
NC_009792:1479779:1483543148354314846401098Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein0636
NC_006155:3040769:3040769304076930420731305Yersinia pseudotuberculosis IP 32953, complete genomeputative lipoprotein2e-153542
NC_003143:2849377:2849377284937728506601284Yersinia pestis CO92, complete genomeputative lipoprotein8e-153540
NC_010159:1861465:1861465186146518627481284Yersinia pestis Angola, complete genomeputative lipoprotein8e-153540
NC_004088:1801819:1821509182150918227921284Yersinia pestis KIM, complete genomehypothetical protein8e-153540
NC_008149:2411161:2411161241116124124441284Yersinia pestis Nepal516, complete genomelipoprotein8e-153540
NC_005810:2613456:2613456261345626147391284Yersinia pestis biovar Microtus str. 91001, complete genomeputative lipoprotein8e-153540
NC_017154:3139614:3159311315931131605941284Yersinia pestis D106004 chromosome, complete genomeputative lipoprotein8e-153540
NC_017160:2740870:2758920275892027602031284Yersinia pestis D182038 chromosome, complete genomeputative lipoprotein8e-153540
NC_017168:2892000:2911776291177629130591284Yersinia pestis A1122 chromosome, complete genomeputative lipoprotein8e-153540
NC_017265:1521276:1542592154259215438751284Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative lipoprotein8e-153540
NC_010465:1724000:1744353174435317456361284Yersinia pseudotuberculosis YPIII, complete genomeprotein of unknown function DUF1876e-153540
NC_009708:1694685:1712954171295417142371284Yersinia pseudotuberculosis IP 31758 chromosome, complete genomelipoprotein6e-153540
NC_014310:811977:8319158319158332581344Ralstonia solanacearum PSI07 megaplasmid, complete sequencelipoprotein yddw4e-139494
NC_003296:941920:9556109556109569531344Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein1e-137489
NC_013526:65495:7874678746803501605Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeprotein of unknown function DUF1876e-89328
NC_014210:4188448:4208888420888842105311644Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein of unknown function DUF1871e-77290
NC_013510:2782240:2788014278801427896121599Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF1876e-76285
NC_016776:3714642:3741395374139537429031509Bacteroides fragilis 638R, complete genomehypothetical protein4e-69262
NC_006347:3760447:3787198378719837887061509Bacteroides fragilis YCH46, complete genomeputative secreted protein4e-69262
NC_014632:11925:1444814448156621215Ilyobacter polytropus DSM 2926 chromosome, complete genomehypothetical protein8e-69261
NC_003228:3690596:3695904369590436974121509Bacteroides fragilis NCTC 9343, complete genomehypothetical protein2e-68260
NC_010163:171148:1711481711481738682721Acholeplasma laidlawii PG-8A chromosome, complete genomehypothetical protein3e-47189
NC_010163:171148:1751911751911769301740Acholeplasma laidlawii PG-8A chromosome, complete genomehypothetical protein2e-46187
NC_014150:3139852:3153372315337231551891818Brachyspira murdochii DSM 12563 chromosome, complete genomeprotein of unknown function DUF1872e-46187
NC_014933:3688000:3692372369237236938291458Bacteroides helcogenes P 36-108 chromosome, complete genomehypothetical protein2e-42173
NC_003228:3690596:3703002370300237044831482Bacteroides fragilis NCTC 9343, complete genomehypothetical protein1e-41171
NC_006347:3760447:3794257379425737957771521Bacteroides fragilis YCH46, complete genomehypothetical protein1e-41171
NC_016776:3714642:3748454374845437499741521Bacteroides fragilis 638R, complete genomehypothetical protein1e-41171
NC_011565:620801:6272686272686287401473Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,hypothetical protein3e-33143
NC_011884:831905:8514808514808526671188Cyanothece sp. PCC 7425, complete genomeprotein of unknown function DUF1871e-1688.2
NC_015519:801929:8225588225588258453288Tepidanaerobacter sp. Re1 chromosome, complete genomehypothetical protein2e-1687
NC_006087:28490:290672906729405339Leifsonia xyli subsp. xyli str. CTCB07, complete genomehypothetical protein8e-1272
NS_000195:219785:2796292796292810771449Candidatus Cloacamonas acidaminovoranshypothetical protein3e-1170.5
NC_010546:3583568:3597997359799735992621266Cyanothece sp. ATCC 51142 chromosome circular, complete sequencehypothetical protein1e-1068.2
NC_005070:904751:9605559605559616131059Synechococcus sp. WH 8102, complete genomehypothetical protein2e-0861.2
NC_005071:1111605:1135586113558611368181233Prochlorococcus marinus str. MIT 9313, complete genomeDUF1872e-0757.8
NC_007513:1311957:1329152132915213303061155Synechococcus sp. CC9902, complete genomehypothetical protein4e-0653.1