Pre_GI: BLASTP Hits

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Query: NC_008120:62000:67735 Yersinia pestis Antiqua plasmid pMT, complete sequence

Start: 67735, End: 68472, Length: 738

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from the Republic of Congo. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008118:56777:6514665146662491104Yersinia pestis Nepal516 plasmid pMT, complete sequenceintegrase2e-139494
NC_005815:61148:7147671476726541179Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completeputative integrase2e-139494
NC_004838:51013:8293182931841091179Yersinia pestis KIM plasmid pMT-1, complete sequence2e-139494
NC_003134:64672:8714787147883251179Yersinia pestis CO92 plasmid pMT1, complete sequence2e-139494
NC_009378:62215:7058470584716871104Yersinia pestis Pestoides F plasmid MT, complete sequenceintegrase5e-139493
NC_014258:355845:3591013591013602401140Pantoea vagans C9-1 plasmid pPag3, complete sequenceprophage Cp4-57 integrase9e-58223
NC_015062:99969:1189951189951201191125Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequenceintegrase family protein5e-57220
NC_016026:2082500:2095118209511820962931176Micavibrio aeruginosavorus ARL-13 chromosome, complete genomephage integrase family protein6e-1167.8
NC_007493:1929000:1930262193026219315031242Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencepossible phage-related integrase5e-1064.7
NC_006569:69939:8572185721869231203Silicibacter pomeroyi DSS-3 megaplasmid, complete sequencesite-specific recombinase, phage integrase family8e-1064.3
NC_007626:697926:7051257051257063541230Magnetospirillum magneticum AMB-1, complete genomeIntegrase4e-0858.5
NC_012660:2045398:2050736205073620520491314Pseudomonas fluorescens SBW25 chromosome, complete genomeputative integrase6e-0857.8
NC_020908:2571943:2584876258487625860331158Octadecabacter arcticus 238, complete genomeputative phage integrase9e-0857.4
NC_008700:367949:3848133848133863601548Shewanella amazonensis SB2B, complete genomehypothetical protein1e-0757.4
NC_008740:443274:4525464525464537361191Marinobacter aquaeolei VT8, complete genomephage integrase family protein2e-0756.6
NC_014541:475350:5175405175405187871248Ferrimonas balearica DSM 9799 chromosome, complete genomeintegrase family protein2e-0756.6
NC_016642:757964:7713177713177725071191Pseudovibrio sp. FO-BEG1 chromosome, complete genomephage integrase family7e-0754.3
NC_015717:2479394:2483484248348424846561173Hyphomicrobium sp. MC1, complete genomeputative Integrase family protein1e-0653.9
NC_002939:47406:7972579725810441320Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu32, integrase9e-0753.9
NC_003911:2042389:2053837205383720550571221Silicibacter pomeroyi DSS-3, complete genomesite-specfic recombinase, phage integrase family2e-0653.1
NC_017506:1100679:1109355110935511107041350Marinobacter adhaerens HP15 chromosome, complete genomephage integrase family protein2e-0652.8
NC_012667:1045782:1058752105875210597561005Vibrio cholerae MJ-1236 chromosome 2, complete genomephage Integrase3e-0652.4
NC_009457:351512:4035974035974048651269Vibrio cholerae O395 chromosome 2, complete sequencephage family integrase4e-0652
NC_011080:2761403:2777919277791927791481230Salmonella enterica subsp. enterica serovar Newport str. SL254,phage integrase family protein4e-0652
NC_016856:2812905:2829421282942128306501230Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sintegrase-like protein3e-0652
NC_017046:2756000:2774953277495327761821230Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage integrase3e-0652
NC_016446:26500:270622706228033972Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completehypothetical protein3e-0652
NC_002506:298868:3004673004673016241158Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completeintegrase, putative5e-0651.6
NC_012580:301500:3016543016543028111158Vibrio cholerae M66-2 chromosome II, complete sequenceintegrase5e-0651.6
NC_012583:335000:3353303353303364871158Vibrio cholerae O395 chromosome chromosome II, complete sequenceputative integrase5e-0651.6
NC_016945:300000:3004523004523016031152Vibrio cholerae IEC224 chromosome II, complete sequenceintegrase5e-0651.6
NC_013861:728648:7416787416787429101233Legionella longbeachae NSW150, complete genomephage-related integrase6e-0651.2
NC_015740:2407500:2415772241577224171721401Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completephage integrase family protein8e-0650.8
NC_013851:2729000:2730696273069627319731278Allochromatium vinosum DSM 180 chromosome, complete genomeintegrase family protein8e-0650.8
NC_014837:2354241:2370139237013923713321194Pantoea sp. At-9b chromosome, complete genomeintegrase family protein9e-0650.8