Pre_GI Gene

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Host: NC_016945 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_016945:300000 Vibrio cholerae IEC224 chromosome II, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3004523016031152integraseQuickGO ontologyBLASTP
301649302629981ISVch5 transposaseQuickGO ontologyBLASTP
3029233041161194hypothetical proteinBLASTP
304637305167531hypothetical proteinBLASTP
305167305838672hypothetical proteinBLASTP
305840306190351hypothetical proteinBLASTP
3064593083871929threonyl-tRNA synthetaseQuickGO ontologyBLASTP
308553308942390translation initiation factor 3QuickGO ontologyBLASTP
30904630924019550S ribosomal protein L35QuickGO ontologyBLASTP
30928230963535450S ribosomal protein L20QuickGO ontologyBLASTP
309717310679963site-specific recombinase IntI4QuickGO ontologyBLASTP
311001311267267hypothetical proteinBLASTP
311422312021600hypothetical proteinBLASTP
312535312702168hypothetical proteinBLASTP
312731313057327hypothetical proteinBLASTP
313771313872102hypothetical proteinBLASTP
313854314036183hypothetical proteinBLASTP
314292314543252hypothetical proteinBLASTP
314696315127432hypothetical proteinBLASTP
315278315907630acetyltransferaseQuickGO ontologyBLASTP
316063316815753short chain dehydrogenasereductase family oxidoreductaseQuickGO ontologyBLASTP
317007317117111hypothetical protein
317117317299183hypothetical proteinBLASTP
317504317881378hypothetical proteinBLASTP
318177318359183hypothetical proteinBLASTP
31859731869599hypothetical proteinBLASTP
318713318895183hypothetical proteinBLASTP
319090319767678hypothetical proteinBLASTP