Pre_GI Gene

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Host: NC_012583 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012583:335000 Vibrio cholerae O395 chromosome chromosome II, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae O395 is a classical O1 serotype strain of the Ogawa biotype. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3353303364871158putative integraseQuickGO ontologyBLASTP
336533337513981ISVch5 transposaseQuickGO ontologyBLASTP
3377893390181230hypothetical proteinBLASTP
339539340069531hypothetical proteinBLASTP
340069340740672hypothetical proteinBLASTP
340742341092351hypothetical proteinBLASTP
3413613432891929threonyl-tRNA synthetaseQuickGO ontologyBLASTP
343455343844390initiation factor IF3QuickGO ontologyBLASTP
343948344142195ribosomal protein L35QuickGO ontologyBLASTP
344184344537354ribosomal protein L20QuickGO ontologyBLASTP
344619345581963site-specific recombinase IntI4QuickGO ontologyBLASTP
345826346425600hypothetical proteinBLASTP
346704347303600hypothetical proteinBLASTP
347589348272684hypothetical proteinBLASTP
348379348651273hypothetical proteinBLASTP
348846348956111hypothetical protein
34901334910896hypothetical proteinBLASTP
349302349637336Plasmid stabilization system proteinQuickGO ontologyBLASTP
349638349880243Prevent-host-death proteinQuickGO ontologyBLASTP
350122350631510GCN5-related N-acetyltransferaseQuickGO ontologyBLASTP
350757351341585hypothetical proteinBLASTP
351636351869234hypothetical proteinBLASTP
35214635224499hypothetical proteinBLASTP
353311353664354killer protein putativeQuickGO ontologyBLASTP
353675353992318antidote protein putativeQuickGO ontologyBLASTP