Pre_GI Gene

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Host: NC_002506 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_002506:298868 Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3004673016241158integrase putativeQuickGO ontologyBLASTP
301670302650981IS5 transposaseQuickGO ontologyBLASTP
3029263041491224hypothetical proteinBLASTP
304670305200531hypothetical proteinBLASTP
305200305871672hypothetical proteinBLASTP
305873306223351hypothetical proteinBLASTP
3064923084201929threonyl-tRNA synthetaseQuickGO ontologyBLASTP
308586308975390initiation factor IF3QuickGO ontologyBLASTP
30907930927319550S ribosomal protein L35QuickGO ontologyBLASTP
30931530966835450S ribosomal protein L20QuickGO ontologyBLASTP
309750310712963site-specific recombinase IntI4QuickGO ontologyBLASTP
311034311300267hypothetical proteinBLASTP
311455312054600hypothetical proteinBLASTP
312716313090375hypothetical proteinBLASTP
313335313523189hypothetical proteinBLASTP
313804313905102hypothetical proteinBLASTP
313887314069183hypothetical proteinBLASTP
314325314576252hypothetical proteinBLASTP
314717315160444hypothetical proteinBLASTP
315311315940630chloramphenicol acetyltransferaseQuickGO ontologyBLASTP
316096316848753oxidoreductase short-chain dehydrogenasereductase familyQuickGO ontologyBLASTP
317150317332183hypothetical proteinBLASTP
317510317914405hypothetical proteinBLASTP
318210318392183hypothetical proteinBLASTP
318630318746117hypothetical proteinBLASTP
318746318928183hypothetical proteinBLASTP