Pre_GI: BLASTP Hits

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Query: NC_007951:570500:602624 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 602624, End: 603352, Length: 729

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007643:3799425:383194738319473832735789Rhodospirillum rubrum ATCC 11170, complete genomeTranscriptional Regulator, Crp/Fnr family5e-30131
NC_011894:3988500:400338440033844004100717Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family2e-23109
NC_011894:5056901:510326151032615103977717Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family2e-23109
NC_010511:6711836:671476367147636715446684Methylobacterium sp. 4-46 chromosome, complete genomeCrp/FNR family transcriptional regulator1e-21103
NC_008027:1847040:187215418721541872888735Pseudomonas entomophila L48, complete genometranscriptional regulator Anr1e-20100
NC_021150:1965264:197785119778511978585735Azotobacter vinelandii CA6, complete genomeFnr-like negative transcriptional regulator of CydAB2e-2099
NC_012560:1965251:197783819778381978572735Azotobacter vinelandii DJ, complete genomeFnr-like negative transcriptional regulator of CydAB2e-2099
NC_014541:2122788:214288821428882143640753Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, Crp/Fnr family1e-1996.7
NC_011894:5468500:546963554696355470327693Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family2e-1996.3
NC_009092:2282437:230490623049062305655750Shewanella loihica PV-4, complete genometranscriptional regulator, Crp/Fnr family5e-1994.7
NC_016513:1568401:158001815800181580791774Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completefumarate/nitrate reduction transcriptional regulator6e-1994.4
NC_013416:1246880:125844412584441259217774Aggregatibacter actinomycetemcomitans D11S-1, complete genometranscriptional activator protein anr6e-1994.4
NC_010688:2400471:242659224265922427353762Xanthomonas campestris pv. campestris, complete genomeTranscriptional regulator, Crp/Fnr family8e-1994
NC_012214:1974500:201414020141402014895756Erwinia pyrifoliae Ep1/96, complete genomeFumarate and nitrate reduction regulatory protein8e-1994
NC_012913:772641:781906781906782679774Aggregatibacter aphrophilus NJ8700, complete genometranscriptional activator protein anr1e-1893.2
NC_003198:1336894:135538713553871356181795Salmonella enterica subsp. enterica serovar Typhi str. CT18,fumarate and nitrate reduction regulatory protein1e-1893.2
NC_004631:1623511:162500116250011625795795Salmonella enterica subsp. enterica serovar Typhi Ty2, completefumarate and nitrate reduction regulatory protein1e-1893.2
NC_008258:1873805:187380518738051874557753Shigella flexneri 5 str. 8401, complete genomeFumarate and nitrate reduction Regulatory protein1e-1893.2
NC_007964:2152000:216817021681702168865696Nitrobacter hamburgensis X14, complete genometranscriptional regulator, Crp/Fnr family2e-1892.8
NC_011149:1429523:144800414480041448756753Salmonella enterica subsp. enterica serovar Agona str. SL483,fumarate and nitrate reduction regulatory protein3e-1892.4
NC_006905:1766000:176744717674471768292846Salmonella enterica subsp. enterica serovar Choleraesuis strtranscriptional regulation of aerobic, anaerobic respiration, osmotic balance (CRP family)3e-1892.4
NC_016863:1711832:171250117125011713295795Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1fumarate/nitrate reduction transcriptional regulator3e-1892.4
NC_011147:1267005:128548912854891286283795Salmonella enterica subsp. enterica serovar Paratyphi A strfumarate/nitrate reduction transcriptional regulator3e-1892.4
NC_006511:1273162:129164612916461292440795Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCfumarate and nitrate reduction regulatory protein3e-1892.4
NC_011080:1750000:175072917507291751481753Salmonella enterica subsp. enterica serovar Newport str. SL254,fumarate and nitrate reduction regulatory protein3e-1892.4
NC_003197:1753663:175437417543741755126753Salmonella typhimurium LT2, complete genometranscriptional regulator3e-1892.4
NC_011094:1726000:172755417275541728306753Salmonella enterica subsp. enterica serovar Schwarzengrund strfumarate/nitrate reduction transcriptional regulator3e-1892.4
NC_017046:1709578:171111017111101711862753Salmonella enterica subsp. enterica serovar Typhimurium str. 798fumarate and nitrate reduction regulatory protein3e-1892.4
NC_016860:1752000:175206517520651752817753Salmonella enterica subsp. enterica serovar Typhimurium strfumarate/nitrate reduction transcriptional regulator3e-1892.4
NC_016857:1709695:171122717112271711979753Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Fumarate and nitrate reduction regulatory protein3e-1892.4
NC_016856:1763640:176435117643511765103753Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sfumarate/nitrate reduction transcriptional regulator3e-1892.4
NC_016810:1709695:171122717112271711979753Salmonella enterica subsp. enterica serovar Typhimurium strfumarate and nitrate reduction regulatory protein3e-1892.4
NC_015761:1630000:164667116466711647465795Salmonella bongori NCTC 12419, complete genomefumarate and nitrate reduction regulatory protein3e-1892
NC_009052:2512373:255438425543842555136753Shewanella baltica OS155, complete genomeputative transcriptional regulator, Crp/Fnr family3e-1892
NC_009792:1345500:136427313642731365103831Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-1891.7
NC_013209:2759160:277893527789352779747813Acetobacter pasteurianus IFO 3283-01, complete genometranscriptional regulator cAMP-binding AadR/Crp/Fnr9e-1890.5
NC_004463:2262467:228840322884032289197795Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulator FixK1e-1790.1
NC_004463:8401060:844141984414198442180762Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulator FixK1e-1687
NC_009467:117812:123843123843124535693Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequenceCRP/FNR family transcriptional regulator9e-1684
NC_006677:1052031:107268610726861073408723Gluconobacter oxydans 621H, complete genomeTranscriptional regulator AadR (cyclic AMP receptor protein)3e-1582
NC_011894:6259649:627470162747016275444744Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family6e-1477.8
NC_014532:722151:734320734320735051732Halomonas elongata DSM 2581, complete genometranscriptional regulator Anr1e-1273.6
NC_010511:5467009:547824954782495478914666Methylobacterium sp. 4-46 chromosome, complete genomeCRP/FNR family transcriptional regulator3e-1272.4
NC_007493:546000:549413549413550153741Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceTranscriptional regulator, CRP/FNR family2e-1169.3
NC_009049:627000:627031627031627771741Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequencecyclic nucleotide-binding protein3e-1168.9
NC_009379:435404:451156451156451926771Polynucleobacter sp. QLW-P1DMWA-1, complete genomeputative transcriptional regulator, Crp/Fnr family4e-1168.6
NC_009075:15017:440874408744842756Burkholderia pseudomallei 668 chromosome II, complete sequencecAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases4e-1168.6
NC_009485:8138314:815645981564598157229771Bradyrhizobium sp. BTAi1 chromosome, complete genomenitrogen fixation regulation protein fixK2e-1065.9
NC_009485:8138314:815373881537388154445708Bradyrhizobium sp. BTAi1 chromosome, complete genomenitrogen fixation regulation protein fixK3e-1065.5
NC_012988:1280610:130177013017701302492723Methylobacterium extorquens DM4, complete genomeCrp/Fnr family transcriptional regulator6e-1064.3
NC_015731:3658956:367863236786323679384753Nitrosomonas sp. Is79A3 chromosome, complete genomeCrp/Fnr family transcriptional regulator2e-0963.2
NC_014934:2223822:222875722287572229515759Cellulophaga algicola DSM 14237 chromosome, complete genometranscriptional regulator, crp/fnr family2e-0962.8
NC_020409:437781:497477497477498151675Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTranscriptional regulator, Crp/Fnr family3e-0962
NC_015588:2939747:294064829406482941325678Isoptericola variabilis 225 chromosome, complete genometranscriptional regulator, Crp/Fnr family5e-0961.6
NC_010172:5447189:544936054493605450313954Methylobacterium extorquens PA1, complete genomecyclic nucleotide-binding6e-0961.2
NC_013530:3365742:336760333676033368280678Xylanimonas cellulosilytica DSM 15894, complete genometranscriptional regulator, Crp/Fnr family6e-0961.2
NC_011757:5742290:574861057486105749509900Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, Crp/Fnr family6e-0961.2
NC_007952:444616:451579451579452328750Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, Crp/Fnr family5e-0961.2
NC_008528:331260:344323344323344988666Oenococcus oeni PSU-1, complete genomeCrp-like transcriptional regulator7e-0960.8
NC_007298:1129889:114843611484361149179744Dechloromonas aromatica RCB, complete genomeCyclic nucleotide-binding:Bacterial regulatory protein, Crp8e-0960.8
NC_007930:50801:665926659267296705Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,Transcriptional regulator, crp family2e-0859.7
NC_015681:102000:116429116429117118690Thermodesulfatator indicus DSM 15286 chromosome, complete genomeCrp/Fnr family transcriptional regulator2e-0859.7
NC_003112:364869:383368383368384102735Neisseria meningitidis MC58, complete genometranscriptional regulator, Crp/Fnr family3e-0858.9
NC_017516:364404:384318384318385052735Neisseria meningitidis H44/76 chromosome, complete genomeCarD family transcriptional regulator3e-0858.9
NC_017515:372487:392257392257392991735Neisseria meningitidis M04-240196 chromosome, complete genomeCarD family transcriptional regulator3e-0858.9
NC_008702:1432952:146890714689071469707801Azoarcus sp. BH72, complete genomeprobable fumarate and nitrate reduction regulatory protein4e-0858.5
NC_010172:3894652:392950539295053930158654Methylobacterium extorquens PA1, complete genomeregulatory protein Crp5e-0858.2
NC_009254:745706:752178752178753053876Burkholderia vietnamiensis G4 chromosome 3, complete sequenceCRP/FNR family transcriptional regulator8e-0857.4
NC_007347:1215358:123856512385651239350786Ralstonia eutropha JMP134 chromosome 1, complete sequenceCyclic nucleotide-binding:Bacterial regulatory protein, Crp1e-0757.4
NC_010676:304405:322022322022322678657Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, Crp/Fnr family3e-0755.8
NC_011894:3268850:327233932723393273262924Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family3e-0755.5
NC_012988:4387735:441080344108034411414612Methylobacterium extorquens DM4, complete genomenitric oxide responsive transcriptional regulator NnrR, Crp/Fnr family5e-0755.1
NC_015436:474710:498940498940499809870Spirochaeta coccoides DSM 17374 chromosome, complete genometranscriptional regulator, Crp/Fnr family5e-0754.7
NC_014910:3458475:346770834677083468451744Alicycliphilus denitrificans BC chromosome, complete genomecyclic nucleotide-binding protein1e-0653.9
NC_015422:1163752:117589611758961176639744Alicycliphilus denitrificans K601 chromosome, complete genomeCrp/Fnr family transcriptional regulator1e-0653.9
NC_012988:32996:485294852949293765Methylobacterium extorquens DM4, complete genomeregulatory protein, Crp1e-0653.9
NC_003295:199354:211194211194211994801Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSCRIPTION REGULATOR PROTEIN1e-0653.9
NC_007973:1821753:183254218325421833276735Ralstonia metallidurans CH34 chromosome 1, complete sequencetranscriptional regulator, Crp/Fnr family1e-0653.5
NC_015850:1614965:162652416265241627255732Acidithiobacillus caldus SM-1 chromosome, complete genomeCrp/Fnr family transcriptional regulator1e-0653.5
NC_014118:1528851:153062115306211531277657Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, Crp/Fnr family2e-0653.1
NC_009485:8138314:815486681548668155327462Bradyrhizobium sp. BTAi1 chromosome, complete genomenitrogen fixation regulation protein fixK2e-0653.1
NC_000911:3478000:348256834825683483284717Synechocystis sp. PCC 6803, complete genomeDNR protein2e-0653.1
NC_017039:3474500:347921234792123479928717Synechocystis sp. PCC 6803 substr. PCC-P, complete genometranscriptional regulator DNR2e-0653.1
NC_017052:3474500:347920134792013479917717Synechocystis sp. PCC 6803 substr. PCC-N, complete genometranscriptional regulator DNR2e-0653.1
NC_017277:3475500:348020134802013480917717Synechocystis sp. PCC 6803, complete genometranscriptional regulator DNR2e-0653.1
NC_011992:1038985:104761010476101048338729Acidovorax ebreus TPSY, complete genometranscriptional regulator, Crp/Fnr family2e-0652.8
NC_012660:2431803:244516724451672445844678Pseudomonas fluorescens SBW25 chromosome, complete genomeputative regulatory protein2e-0652.8
NC_008699:1673181:171828917182891718996708Nocardioides sp. JS614, complete genomecyclic nucleotide-binding2e-0652.8
NC_012988:769981:806343806343807155813Methylobacterium extorquens DM4, complete genomeCrp/Fnr family transcriptional regulator2e-0652.8
NC_010172:798923:832740832740833504765Methylobacterium extorquens PA1, complete genomecyclic nucleotide-binding2e-0652.8
NC_008782:1136732:114535311453531146096744Acidovorax sp. JS42, complete genomeputative transcriptional regulator, Crp/Fnr family2e-0652.8
NC_010172:798923:8426678426678437971131Methylobacterium extorquens PA1, complete genomecyclic nucleotide-binding3e-0652.4
NC_010725:4035397:410845141084514109200750Methylobacterium populi BJ001, complete genometranscriptional regulator, Crp/Fnr family3e-0652.4
NC_011757:39881:5967159671608251155Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, Crp/Fnr family3e-0652.4
NC_011757:3540992:3571656357165635728101155Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, Crp/Fnr family4e-0652
NC_010172:57500:834578345784224768Methylobacterium extorquens PA1, complete genomecyclic nucleotide-binding4e-0652
NC_012988:769981:8174538174538185831131Methylobacterium extorquens DM4, complete genomeCrp/Fnr family transcriptional regulator5e-0651.6
NC_016052:2335648:234916823491682349875708Tetragenococcus halophilus NBRC 12172, complete genomeFNR-like protein FLP8e-0650.8