Pre_GI: BLASTP Hits

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Query: NC_007951:4741620:4742254 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 4742254, End: 4743345, Length: 1092

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012724:147454:1687801687801698381059Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein3e-126451
NC_012660:1804610:1825085182508518261161032Pseudomonas fluorescens SBW25 chromosome, complete genomeputative Rieske domain hypothetical protein1e-93343
NC_009092:1504363:1541211154121115423201110Shewanella loihica PV-4, complete genomeRieske (2Fe-2S) domain protein9e-24111
NC_014117:3375796:3392980339298033940951116Burkholderia sp. CCGE1002 chromosome chromosome 1, completeRieske (2Fe-2S) iron-sulfur domain protein6e-22105
NC_014117:3375796:3383271338327133844071137Burkholderia sp. CCGE1002 chromosome chromosome 1, completeRieske (2Fe-2S) iron-sulfur domain protein2e-1687.4
NC_007492:3384077:3404926340492634062841359Pseudomonas fluorescens PfO-1, complete genomering hydroxylating dioxygenase, alpha subunit5e-1479
NC_012732:1:8287828794201134Rickettsia peacockii str. Rustic plasmid pRPR, complete sequenceputative phenylpropionate dioxygenase1e-1274.3
NC_010002:661696:6738296738296749741146Delftia acidovorans SPH-1, complete genomeRieske (2Fe-2S) domain protein3e-1273.2
NC_010512:951527:9732909732909746481359Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceRieske (2Fe-2S) domain protein6e-1272
NC_017506:1100679:1132749113274911339931245Marinobacter adhaerens HP15 chromosome, complete genomeRieske (2Fe-2S) domain-containing protein6e-1272
NC_017271:2278500:2289754228975422908871134Xanthomonas campestris pv. raphani 756C chromosome, completering hydroxylating dioxygenase subunit alpha8e-1271.6
NC_013769:826933:8340608340608353761317Sulfolobus islandicus L.D.8.5 chromosome, complete genomeRieske (2Fe-2S) domain-containing protein1e-1171.2
NC_018697:505915:5116715116715130321362Cycloclasticus sp. P1 chromosome, complete genomeRing hydroxylating dioxygenase, alpha subunit: Rieske (2Fe-2S) region protein1e-1171.2
NC_015563:1951368:1960204196020419615621359Delftia sp. Cs1-4 chromosome, complete genomeNaphthalene 1,2-dioxygenase1e-1170.9
NC_015942:2316354:2327248232724823284231176Acidithiobacillus ferrivorans SS3 chromosome, complete genomeRieske (2Fe-2S) iron-sulfur domain-containing protein2e-1170.1
NC_017275:698854:7137517137517150671317Sulfolobus islandicus HVE10/4 chromosome, complete genomeRieske (2Fe-2S) domain-containing protein2e-1170.1
NC_013947:5546315:5555951555595155571231173Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeRieske (2Fe-2S) domain-containing protein3e-1169.7
NC_011740:1494796:1518558151855815199401383Escherichia fergusonii ATCC 35469, complete genomeBenzoate 1,2-dioxygenase alpha subunit1e-1067.8
NC_016604:3184855:3211041321104132124381398Mycobacterium rhodesiae NBB3 chromosome, complete genomering-hydroxylating dioxygenase, large terminal subunit2e-1067.4
NC_007953:1043957:1043957104395710451201164Burkholderia xenovorans LB400 chromosome 3, complete sequencePutative Rieske-type ring dioxygenase2e-1067
NC_014117:132524:176142176142176990849Burkholderia sp. CCGE1002 chromosome chromosome 1, completeRieske (2Fe-2S) iron-sulfur domain protein3e-1066.6
NC_009077:1725683:1762812176281217642121401Mycobacterium sp. JLS, complete genomering hydroxylating dioxygenase, alpha subunit2e-1066.6
NC_008705:1790222:1832737183273718341371401Mycobacterium sp. KMS, complete genomering hydroxylating dioxygenase, alpha subunit2e-1066.6
NC_008595:5234467:5234467523446752357351269Mycobacterium avium 104, complete genomedioxygenase large subunit3e-1066.2
NC_013757:3012130:3022635302263530238461212Geodermatophilus obscurus DSM 43160, complete genomeRieske (2Fe-2S) iron-sulphur domain protein4e-1065.9
NC_003910:4234000:4234704423470442359871284Colwellia psychrerythraea 34H, complete genomeiron-sulfur cluster-binding protein, Rieske family5e-1065.9
NC_016642:2573481:2575118257511825762571140Pseudovibrio sp. FO-BEG1 chromosome, complete genomeRieske 2Fe-2S family protein6e-1065.5
NC_015434:1313979:1319047131904713203541308Verrucosispora maris AB-18-032 chromosome, complete genomeputative ring-hydroxylating dioxygenase subunit7e-1065.1
NC_015942:2316354:2335744233574423369461203Acidithiobacillus ferrivorans SS3 chromosome, complete genomeRieske (2Fe-2S) iron-sulfur domain-containing protein9e-1064.7
NC_009338:555587:5660035660035674031401Mycobacterium gilvum PYR-GCK chromosome, complete genomering hydroxylating dioxygenase subunit alpha1e-0964.7
NC_008726:4725389:4738281473828147396211341Mycobacterium vanbaalenii PYR-1, complete genomering hydroxylating dioxygenase, alpha subunit1e-0964.3
NC_010512:110932:1265651265651279231359Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceRieske (2Fe-2S) domain protein2e-0963.9
NC_017904:1763015:1761747176174717630181272Mycobacterium sp. MOTT36Y chromosome, complete genomedioxygenase large subunit2e-0963.9
NC_009077:2308634:2332127233212723335031377Mycobacterium sp. JLS, complete genomering hydroxylating dioxygenase, alpha subunit2e-0963.9
NC_011002:564654:5651395651395664971359Burkholderia cenocepacia J2315 chromosome 3, complete sequencebenzoate 1,2-dioxygenase alpha subunit2e-0963.9
NC_009338:555587:5957785957785971541377Mycobacterium gilvum PYR-GCK chromosome, complete genomering hydroxylating dioxygenase subunit alpha2e-0963.9
NC_009077:1687304:1719187171918717205541368Mycobacterium sp. JLS, complete genomering hydroxylating dioxygenase, alpha subunit3e-0963.2
NC_014098:2332938:2344875234487523461701296Bacillus tusciae DSM 2912 chromosome, complete genomeRieske (2Fe-2S) iron-sulfur domain protein3e-0963.2
NC_008146:1748026:1779570177957017809371368Mycobacterium sp. MCS, complete genomering hydroxylating dioxygenase, alpha subunit3e-0963.2
NC_007508:2277640:2289563228956322907021140Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative Rieske 2Fe-2S family protein7e-0962
NC_009512:3282500:3286623328662332879271305Pseudomonas putida F1, complete genomering hydroxylating dioxygenase, alpha subunit9e-0961.6
NC_013209:2384826:2396054239605423973191266Acetobacter pasteurianus IFO 3283-01, complete genomering hydroxylating dioxygenase8e-0961.6
NC_017100:2383487:2397261239726123985261266Acetobacter pasteurianus IFO 3283-03, complete genomering hydroxylating dioxygenase8e-0961.6
NC_017108:2383370:2394598239459823958631266Acetobacter pasteurianus IFO 3283-12, complete genomering hydroxylating dioxygenase8e-0961.6
NC_017111:2383388:2394616239461623958811266Acetobacter pasteurianus IFO 3283-32, complete genomering hydroxylating dioxygenase8e-0961.6
NC_017121:2383375:2394603239460323958681266Acetobacter pasteurianus IFO 3283-07, complete genomering hydroxylating dioxygenase8e-0961.6
NC_017125:2383467:2397241239724123985061266Acetobacter pasteurianus IFO 3283-22, complete genomering hydroxylating dioxygenase8e-0961.6
NC_017146:2383509:2397283239728323985481266Acetobacter pasteurianus IFO 3283-26, complete genomering hydroxylating dioxygenase8e-0961.6
NC_017150:2290681:2303800230380023050651266Acetobacter pasteurianus IFO 3283-01-42C, complete genomering hydroxylating dioxygenase8e-0961.6
NC_008726:925895:9366969366969380211326Mycobacterium vanbaalenii PYR-1, complete genomeRieske (2Fe-2S) domain protein8e-0961.6
NC_004129:1848701:1859840185984018609821143Pseudomonas fluorescens Pf-5, complete genomeRieske 2Fe-2S domain protein1e-0861.2
NC_003911:3864852:3889522388952238906641143Silicibacter pomeroyi DSS-3, complete genomeRieske 2Fe-2S domain protein1e-0860.8
NC_016147:2820232:2837062283706228383001239Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative dioxygenase hydroxylase component subunit alpha2e-0860.5
NC_020064:3157656:3182892318289231842141323Serratia marcescens FGI94, complete genomering-hydroxylating dioxygenase, large terminal subunit2e-0860.1
NC_011961:304158:3282653282653296321368Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence3-phenylpropionate dioxygenase subunit alpha (Digoxigenin subunit alpha)6e-0858.9
NC_017904:4203257:4217034421703442183171284Mycobacterium sp. MOTT36Y chromosome, complete genomedioxygenase8e-0858.5
NC_002927:506183:5457415457415469221182Bordetella bronchiseptica RB50, complete genomeputative dioxygenase subunit7e-0858.5
NC_016147:1788219:179508317950831795544462Pseudoxanthomonas spadix BD-a59 chromosome, complete genomePhenylpropionate dioxygenase, large terminal subunit9e-0858.2
NC_009338:555587:5865125865125879031392Mycobacterium gilvum PYR-GCK chromosome, complete genomering hydroxylating dioxygenase subunit alpha1e-0757.8
NC_009338:630130:6601966601966615871392Mycobacterium gilvum PYR-GCK chromosome, complete genomering hydroxylating dioxygenase subunit alpha1e-0757.8
NC_008726:549102:5671695671695685601392Mycobacterium vanbaalenii PYR-1, complete genomering hydroxylating dioxygenase, alpha subunit1e-0757.8
NC_008705:1790222:1806851180685118082421392Mycobacterium sp. KMS, complete genomering hydroxylating dioxygenase, alpha subunit1e-0757.8
NC_009077:1725683:1742312174231217437031392Mycobacterium sp. JLS, complete genomering hydroxylating dioxygenase, alpha subunit1e-0757.8
NC_008146:1748026:1803818180381818052091392Mycobacterium sp. MCS, complete genomering hydroxylating dioxygenase, alpha subunit1e-0757.8
NC_014814:169374:1853371853371867281392Mycobacterium sp. Spyr1 chromosome, complete genomering-hydroxylating dioxygenase, large terminal subunit1e-0757.8
NC_015381:1705383:1705383170538317066601278Burkholderia gladioli BSR3 chromosome 1, complete sequenceBenzoate 1,2-dioxygenase subunit alpha1e-0757.8
NC_012521:148886:1701401701401715221383Rhodococcus opacus B4 plasmid pROB02, complete sequencebenzene dioxygenase large subunit2e-0757.4
NC_016604:3184855:3190533319053331919151383Mycobacterium rhodesiae NBB3 chromosome, complete genomering-hydroxylating dioxygenase, large terminal subunit2e-0757.4
NC_008268:442657:4536774536774548671191Rhodococcus sp. RHA1, complete genomeprobable naphthalene 1,2-dioxygenase3e-0756.6
NC_009921:3854969:3881847388184738831571311Frankia sp. EAN1pec, complete genomeRieske (2Fe-2S) domain protein3e-0756.2
NC_003911:3864852:3887290388729038883991110Silicibacter pomeroyi DSS-3, complete genomeRieske 2Fe-2S domain protein4e-0756.2
NC_016943:1560000:1571365157136515726301266Blastococcus saxobsidens DD2, complete genomering-hydroxylating dioxygenase, large terminal subunit4e-0756.2
NC_017506:1:4330043300446161317Marinobacter adhaerens HP15 chromosome, complete genomering hydroxylating dioxygenase subunit alpha5e-0755.8
NC_007974:2097334:2148097214809721494161320Ralstonia metallidurans CH34 chromosome 2, complete sequenceRieske (2Fe-2S) region8e-0755.1
NC_015554:4002952:4008169400816940095151347Alteromonas sp. SN2 chromosome, complete genomering hydroxylating dioxygenase subunit alpha8e-0755.1
NC_010634:2894631:2912241291224129133651125Yersinia pseudotuberculosis PB1/+, complete genomeRieske (2Fe-2S) domain-containing protein1e-0654.3
NC_006155:2979500:2994309299430929954331125Yersinia pseudotuberculosis IP 32953, complete genomeputative dioxygenase alpha subunit1e-0654.3
NC_010465:1790739:1790739179073917918631125Yersinia pseudotuberculosis YPIII, complete genomeRieske (2Fe-2S) domain protein1e-0654.3
NC_009381:2138625:2153482215348221546061125Yersinia pestis Pestoides F chromosome, complete genomedioxygenase alpha subunit1e-0654.3
NC_009708:1735903:1757727175772717588511125Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeRieske (2Fe-2S) domain-containing protein1e-0654.3
NC_017160:2787637:2807184280718428083081125Yersinia pestis D182038 chromosome, complete genomeputative dioxygenase subunit alpha1e-0654.3
NC_017168:2941938:2960037296003729611611125Yersinia pestis A1122 chromosome, complete genomeputative dioxygenase subunit alpha1e-0654.3
NC_005810:2549680:2567329256732925685371209Yersinia pestis biovar Microtus str. 91001, complete genomeputative dioxygenase alpha subunit1e-0654.3
NC_014974:1076565:1089566108956610909031338Thermus scotoductus SA-01 chromosome, complete genomebiphenyl dioxygenase subunit alpha2e-0653.9
NC_009921:5609770:5633802563380256351451344Frankia sp. EAN1pec, complete genomeRieske (2Fe-2S) domain protein2e-0653.9
NC_002928:507749:5444005444005455811182Bordetella parapertussis 12822, complete genomeputative dioxygenase subunit2e-0653.9
NC_015458:2614108:2630752263075226319841233Pusillimonas sp. T7-7 chromosome, complete genomeputative dioxygenase subunit2e-0653.9
NC_015580:3252534:3266088326608832674521365Novosphingobium sp. PP1Y, complete genomering hydroxylating dioxygenase subunit alpha2e-0653.9
NC_016147:1825827:1832551183255118338911341Pseudoxanthomonas spadix BD-a59 chromosome, complete genomering hydroxylating dioxygenase subunit alpha2e-0653.5
NC_017265:1571305:159085215908521591634783Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,2e-0653.5
NC_016745:1719800:1738518173851817397051188Oceanimonas sp. GK1 chromosome, complete genomephenylpropionate dioxygenase large subunit-like protein4e-0652.8
NC_010170:3944228:3947376394737639489051530Bordetella petrii, complete genomelarge terminal subunit of phenylpropionate dioxygenase4e-0652.8