Pre_GI: BLASTP Hits

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Query: NC_007951:4608560:4634624 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 4634624, End: 4636591, Length: 1968

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010611:3413333:3433379343337934353221944Acinetobacter baumannii ACICU, complete genomesoluble lytic murein transglycosylase, related regulatory protein1e-62241
NC_014618:4010689:4010689401068940126261938Enterobacter cloacae SCF1 chromosome, complete genomelytic transglycosylase1e-38161
NC_012779:610509:6105096105096124371929Edwardsiella ictaluri 93-146, complete genomesoluble lytic murein transglycosylase6e-35149
NC_018643:641360:6480496480496503132265Alpha proteobacterium HIMB5 chromosome, complete genometransglycosylase family protein7e-27122
NC_015580:3252534:3252534325253432545011968Novosphingobium sp. PP1Y, complete genomelytic transglycosylase catalytic subunit subunit4e-25117
NC_006156:271410:2692702692702714172148Borrelia garinii PBi chromosome linear, complete sequencehypothetical protein5e-20100
NC_001318:270488:2704882704882727012214Borrelia burgdorferi B31, complete genomehypothetical protein1e-1999
NC_011728:269853:2698532698532720062154Borrelia burgdorferi ZS7, complete genometransglycosylase1e-1998.6
NC_014623:4535544:4553368455336845557882421Stigmatella aurantiaca DW4/3-1 chromosome, complete genometransglycosylase slt domain-containing protein2e-1997.8
NC_008044:136844:1631291631291650961968Silicibacter sp. TM1040, complete genomeLytic transglycosylase, catalytic5e-1996.7
NC_015064:2341152:2361716236171623640612346Acidobacterium sp. MP5ACTX9 chromosome, complete genomeLytic transglycosylase catalytic3e-1790.5
NC_018604:1045774:105879510587951059511717Brachyspira pilosicoli WesB complete genomelytic transglycosylase5e-1790.1
NC_010718:1959517:198001019800101980597588Natranaerobius thermophilus JW/NM-WN-LF, complete genomeLytic transglycosylase catalytic5e-1790.1
NC_014330:2268773:228178822817882282501714Brachyspira pilosicoli 95/1000 chromosome, complete genomelytic transglycosylase2e-1688.2
NC_019908:982471:989710989710990426717Brachyspira pilosicoli P43/6/78 chromosome, complete genomelytic transglycosylase2e-1687.8
NC_015913:293980:294595294595295146552Candidatus Arthromitus sp. SFB-mouse-Japan, complete genometransglycosylase2e-1584.7
NC_018607:1803500:180877418087741809490717Brachyspira pilosicoli B2904 chromosome, complete genomelytic transglycosylase2e-1584.7
NC_015684:2369651:2371278237127823734672190Oligotropha carboxidovorans OM5 chromosome, complete genomelytic transglycosylase3e-1584
NC_014150:446359:453240453240453983744Brachyspira murdochii DSM 12563 chromosome, complete genomeLytic transglycosylase catalytic4e-1583.6
NC_009633:2137999:2137999213799921397591761Alkaliphilus metalliredigens QYMF chromosome, complete genomelytic transglycosylase catalytic subunit7e-1582.8
NC_016012:236012:256637256637257188552Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeSlt family transglycosylase1e-1482
NC_012225:787737:794109794109794822714Brachyspira hyodysenteriae WA1, complete genomelytic transglycosylase2e-1481.3
NC_013523:959625:9807889807889830282241Sphaerobacter thermophilus DSM 20745 chromosome 1, complete genomeLytic transglycosylase catalytic1e-1379
NC_021182:2059143:208183620818362082390555Clostridium pasteurianum BC1, complete genomesoluble lytic murein transglycosylase-like protein1e-1378.6
NC_017243:1229597:124215712421571242882726Brachyspira intermedia PWS/A chromosome, complete genomelytic transglycosylase2e-1378.2
NC_017179:1197763:119776311977631198317555Clostridium difficile BI1, complete genometransglycosylase2e-1377.8
NC_013315:1187986:118798611879861188540555Clostridium difficile CD196 chromosome, complete genometransglycosylase2e-1377.8
NC_009089:1329826:132982613298261330380555Clostridium difficile 630, complete genomeputative transglycosylase2e-1377.8
NC_014219:1736000:175182117518211752510690Bacillus selenitireducens MLS10 chromosome, complete genomeLytic transglycosylase catalytic3e-1377.4
NC_003366:2266757:228197822819782282523546Clostridium perfringens str. 13, complete genomehypothetical protein6e-1376.6
NC_008261:2481500:249581124958112496356546Clostridium perfringens ATCC 13124, complete genometransglycosylase, SLT family7e-1376.3
NC_008262:2150944:216507121650712165616546Clostridium perfringens SM101, complete genomesecreted protein8e-1376.3
NC_012914:1824955:182495518249551825521567Paenibacillus sp. JDR-2, complete genomeLytic transglycosylase catalytic1e-1275.1
NC_016627:793583:793583793583794260678Clostridium clariflavum DSM 19732 chromosome, complete genomelytic murein transglycosylase3e-1274.3
NC_014972:137184:158025158025158633609Desulfobulbus propionicus DSM 2032 chromosome, complete genomelytic transglycosylase catalytic7e-1273.2
NC_010730:180000:1931691931691948391671Sulfurihydrogenibium sp. YO3AOP1, complete genomeLytic transglycosylase catalytic7e-1273.2
NC_009092:4337617:435105243510524351783732Shewanella loihica PV-4, complete genomeLytic transglycosylase, catalytic3e-1170.9
NC_019908:499929:4999294999295021632235Brachyspira pilosicoli P43/6/78 chromosome, complete genomelytic transglycosylase catalytic domain-containing protein3e-1170.9
NC_014330:139175:1556691556691579032235Brachyspira pilosicoli 95/1000 chromosome, complete genomelytic transglycosylase catalytic domain-containing protein3e-1170.9
NC_000964:2146000:2248350224835022552076858Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein7e-1169.7
NC_020126:4430142:445184144518414452590750Myxococcus stipitatus DSM 14675, complete genometransglycosylase SLT domain-containing protein2e-1068.6
NC_009832:4269804:4292220429222042949162697Serratia proteamaculans 568, complete genomeLytic transglycosylase catalytic3e-1067.8
NC_011772:1575674:159336415933641594149786Bacillus cereus G9842, complete genometransglycosylase, SLT family3e-1067.8
NC_007517:2165657:217968121796812180292612Geobacter metallireducens GS-15, complete genomeLytic transglycosylase, catalytic3e-1067.4
NC_009012:3224000:323867632386763239362687Clostridium thermocellum ATCC 27405, complete genomeLytic transglycosylase, catalytic3e-1067.4
NC_015425:2277570:229041522904152291074660Clostridium botulinum BKT015925 chromosome, complete genomelytic murein transglycosylase6e-1066.6
NC_016027:2387832:2396801239680123984741674Gluconacetobacter xylinus NBRC 3288, complete genomelytic murein transglycosylase6e-1066.6
NC_009664:533021:5479845479845490901107Kineococcus radiotolerans SRS30216, complete genomeLytic transglycosylase catalytic7e-1066.2
NC_020181:5384015:5384015538401553866362622Enterobacter aerogenes EA1509E, complete genomeLytic transglycosylase, catalytic1e-0965.5
NC_010338:2443765:244503624450362445866831Caulobacter sp. K31, complete genomeLytic transglycosylase catalytic1e-0965.1
NC_009483:2854500:287564628756462876242597Geobacter uraniireducens Rf4 chromosome, complete genomelytic transglycosylase3e-0964.3
NC_013194:963735:997671997671998336666Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeLytic transglycosylase catalytic3e-0964.3
NC_010814:2217153:224462722446272245265639Geobacter lovleyi SZ, complete genomeLytic transglycosylase catalytic4e-0963.5
NC_006526:1202000:1207593120759312086451053Zymomonas mobilis subsp. mobilis ZM4, complete genomelytic murein transglycosylase5e-0963.5
NC_008593:2020473:203784220378422038495654Clostridium novyi NT, complete genomelytic murein transglycosylase, putative6e-0963.2
NC_018145:147759:1590441590441609841941Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completelytic transglycosylase6e-0963.2
NC_014623:6150028:618544061854406186174735Stigmatella aurantiaca DW4/3-1 chromosome, complete genometransglycosylase slt domain-containing protein7e-0963.2
NC_009483:5113729:512062851206285121383756Geobacter uraniireducens Rf4 chromosome, complete genomelytic transglycosylase9e-0962.8
NC_011365:1135750:116084511608451161546702Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomelytic transglycosylase2e-0861.2
NC_015572:1421782:143602314360231436871849Methylomonas methanica MC09 chromosome, complete genomelytic transglycosylase catalytic subunit3e-0860.8
NC_013524:1207845:122879012287901229689900Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeLytic transglycosylase catalytic5e-0860.1
NC_007644:1638083:164380416438041644424621Moorella thermoacetica ATCC 39073, complete genomeLytic transglycosylase, catalytic7e-0859.7
NC_011660:1889504:189604518960451896713669Listeria monocytogenes HCC23 chromosome, complete genometransglycosylase1e-0758.9
NC_014311:1888686:189788118978811898510630Ralstonia solanacearum PSI07 chromosome, complete genometransglycosylase2e-0758.5
NC_014733:1857020:188059718805971881241645Methylovorus sp. MP688 chromosome, complete genomelytic transglycosylase catalytic2e-0758.2
NC_017249:3119000:312077331207733121489717Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-0758.2
NC_007760:4055860:409261540926154093244630Anaeromyxobacter dehalogenans 2CP-C, complete genomeLytic transglycosylase, catalytic2e-0758.2
NC_011891:4104000:412519141251914125820630Anaeromyxobacter dehalogenans 2CP-1, complete genomeLytic transglycosylase catalytic3e-0757.8
NC_010125:381711:399853399853400524672Gluconacetobacter diazotrophicus PAl 5, complete genomeputative lytic transglycosylase3e-0757.8
NC_011386:3723019:257725773497921Oligotropha carboxidovorans OM5, complete genomelytic transglycosylase, catalytic2e-0757.8
NC_014733:1073540:107696010769601077583624Methylovorus sp. MP688 chromosome, complete genomelytic transglycosylase catalytic3e-0757.4
NC_017179:281069:299909299909300577669Clostridium difficile BI1, complete genometransglycosylase4e-0757.4
NC_013173:1356526:137746913774691377996528Desulfomicrobium baculatum DSM 4028, complete genomeLytic transglycosylase catalytic4e-0757.4
NC_014972:544146:547516547516548247732Desulfobulbus propionicus DSM 2032 chromosome, complete genomelytic transglycosylase catalytic5e-0757
NC_011894:2184956:220462022046202205339720Methylobacterium nodulans ORS 2060, complete genomeLytic transglycosylase catalytic5e-0756.6
NC_020181:3585898:3608834360883436104591626Enterobacter aerogenes EA1509E, complete genomeTransglycosylase, Slt family8e-0756.2
NC_007925:3933765:395291039529103953635726Rhodopseudomonas palustris BisB18, complete genomeLytic transglycosylase, catalytic8e-0756.2
NC_014010:1850500:186479318647931865680888Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeLytic transglycosylase, catalytic8e-0756.2
NC_013792:109203:1174391174391196102172Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequenceSPbeta phage protein; lytic transglycosylase7e-0756.2
NC_004463:18497:415374153742445909Bradyrhizobium japonicum USDA 110, complete genomeprobable transglycosylase7e-0756.2
NC_008686:1472899:147489714748971475661765Paracoccus denitrificans PD1222 chromosome 1, complete sequenceLytic transglycosylase, catalytic7e-0756.2
NC_015711:5479879:550380255038025504542741Myxococcus fulvus HW-1 chromosome, complete genometransglycosylase SLT domain-containing protein7e-0756.2
NC_009720:4406991:444047844404784441275798Xanthobacter autotrophicus Py2, complete genomelytic transglycosylase catalytic7e-0756.2
NC_008555:696217:712724712724713407684Listeria welshimeri serovar 6b str. SLCC5334, complete genometransglycosylase, SLT family1e-0655.8
NC_015160:2521849:2538245253824525396331389Odoribacter splanchnicus DSM 20712 chromosome, complete genomeextracellular solute-binding protein family 31e-0655.5
NC_009727:1177390:1178437117843711797141278Coxiella burnetii Dugway 7E9-12, complete genometransglycosylase, Slt family1e-0655.5
NC_009675:4281249:429915642991564299785630Anaeromyxobacter sp. Fw109-5 chromosome, complete genomelytic transglycosylase catalytic subunit1e-0655.5
NC_014212:501449:510294510294510758465Meiothermus silvanus DSM 9946 chromosome, complete genomeLytic transglycosylase catalytic2e-0655.1
NC_014376:3671441:368650836865083687230723Clostridium saccharolyticum WM1 chromosome, complete genomeLytic transglycosylase catalytic2e-0655.1
NC_016027:2512297:2515110251511025162521143Gluconacetobacter xylinus NBRC 3288, complete genomemurein transglycosylase2e-0654.7
NC_013891:640784:657261657261657935675Listeria seeligeri serovar 1/2b str. SLCC3954, complete genometransglycosylase, SLT family3e-0654.3
NC_007759:1571425:157745515774551578108654Syntrophus aciditrophicus SB, complete genomesoluble lytic murein transglycosylase4e-0653.9
NC_014220:1858747:187483218748321875473642Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeLytic transglycosylase catalytic8e-0652.8