Pre_GI: BLASTP Hits

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Query: NC_007607:87000:116800 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 116800, End: 116973, Length: 174

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009801:1756610:175854817585481759012465Escherichia coli E24377A, complete genomeIS66 family element, orf16e-0959.7
NC_013361:3867558:389845438984543898939486Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein7e-0959.3
NC_013716:2476334:248499424849942485671678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-0858.5
NC_007385:157516:161897161897162565669Shigella sonnei Ss046 plasmid pSS_046, complete sequenceputative transposase1e-0858.5
NC_013716:3708415:372254337225433723220678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-0858.5
NC_013716:1138441:114611011461101146787678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-0858.5
NC_013716:4824541:483553548355354836212678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-0858.5
NC_009790:42112:442404424044917678Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element, orf11e-0858.5
NC_013716:2764550:279093027909302791607678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-0858.5
NC_013716:4306695:431035743103574311034678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-0858.5
NC_013361:3313284:331480333148033315450648Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-0858.5
NC_007607:87000:901639016390831669Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative transposase1e-0858.5
NC_013716:2764550:279183027918302792507678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-0858.5
NC_013716:3327881:335750833575083358185678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-0858.5
NC_009801:3374501:338814533881453388822678Escherichia coli E24377A, complete genomeIS66 family element, orf11e-0858.5
AP010958:5090696:509396850939685094393426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-0754.7
AP010958:3627355:365264736526473653072426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-0754.7
NC_013353:3627355:365264736526473653072426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-0754.7
NC_013353:5090696:509396850939685094393426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-0754.7
NC_013941:3676146:370144037014403701865426Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase-like protein2e-0754.7
CP002797:4603787:462158746215874622012426Escherichia coli NA114, complete genomeIS-66 transposase2e-0754.7
NC_011748:4792703:479270347927034793128426Escherichia coli 55989, complete genomeputative transposase OrfA from plasmid origin2e-0754.7
CU928145:4792703:479270347927034793128426Escherichia coli 55989 chromosome, complete genomeputative transposase OrfA from plasmid origin2e-0754.7
NC_014228:2270000:229328422932842293916633Xenorhabdus nematophila ATCC 19061, complete genomeputative transposase2e-0754.3
NC_011601:3338888:336418933641893364614426Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf1 of IS6826e-0752.8
NC_014839:68308:881018810188736636Pantoea sp. At-9b plasmid pPAT9B02, complete sequencetransposase IS3/IS911 family protein8e-0752.4
NC_011745:4862218:486790848679084868333426Escherichia coli ED1a chromosome, complete genomeputative transposase1e-0651.6