Pre_GI: BLASTP Hits

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Query: NC_007492:3384077:3406433 Pseudomonas fluorescens PfO-1, complete genome

Start: 3406433, End: 3407407, Length: 975

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017506:1100679:112975111297511130716966Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein4e-55215
NC_011666:1572487:159137615913761592359984Methylocella silvestris BL2, complete genometranscriptional regulator, AraC family4e-23108
NC_009511:4582188:459546145954614596450990Sphingomonas wittichii RW1 chromosome, complete genomehelix-turn-helix domain-containing protein3e-21102
NC_014118:987889:101553710155371016523987Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, AraC family7e-2098.2
NC_010170:3944228:3955435395543539564451011Bordetella petrii, complete genomeAraC-type transcriptional regulator2e-1996.7
NC_009338:555587:5624375624375635461110Mycobacterium gilvum PYR-GCK chromosome, complete genomehelix-turn-helix domain-containing protein1e-1894
NC_007298:1418500:145904814590481460040993Dechloromonas aromatica RCB, complete genomeHelix-turn-helix, AraC type3e-1892.4
NC_015723:2550000:2553741255374125548051065Cupriavidus necator N-1 chromosome 2, complete sequenceAraC family transcriptional regulator9e-1891.3
NC_009077:1725683:177062317706231771621999Mycobacterium sp. JLS, complete genomehelix-turn-helix- domain containing protein, AraC type2e-1789.7
NC_008705:1790222:1837844183784418389531110Mycobacterium sp. KMS, complete genomehelix-turn-helix- domain containing protein, AraC type4e-1789.4
NC_008705:1839983:1851259185125918523681110Mycobacterium sp. KMS, complete genomehelix-turn-helix- domain containing protein, AraC type4e-1789.4
NC_012721:2556160:2556160255616025571941035Burkholderia glumae BGR1 chromosome 2, complete genomeTranscriptional regulator, AraC family protein2e-1687
NC_016604:3184855:3214230321423032152311002Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain6e-1582
NC_015312:6717973:6725802672580267268601059Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeAraC family transcriptional regulator2e-1480.1
NC_013947:326980:3285913285913296791089Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, AraC family4e-1479
NC_007951:3655088:365508836550883656071984Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, AraC family8e-1478.2
NC_010170:1580832:158669015866901587673984Bordetella petrii, complete genometranscriptional regulator, AraC family8e-1478.2
NC_006361:4521820:452975545297554530690936Nocardia farcinica IFM 10152, complete genomeputative transcriptional regulator1e-1377.8
NC_016147:2964178:297845229784522979423972Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeAraC family regulatory protein2e-1273.9
NC_004463:8401060:8411896841189684129091014Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein2e-1273.6
NC_012522:5847699:5855486585548658564901005Rhodococcus opacus B4, complete genomeputative thc operon regulatory protein4e-1272.4
NC_014814:3364336:337792233779223378278357Mycobacterium sp. Spyr1 chromosome, complete genometranscriptional regulator, AraC family4e-1272.4
NC_009077:2308634:231165523116552312050396Mycobacterium sp. JLS, complete genomehelix-turn-helix- domain containing protein, AraC type8e-1271.2
NC_011000:1216430:1250917125091712520081092Burkholderia cenocepacia J2315 chromosome 1, complete sequenceAraC family regulatory protein6e-1168.6
NC_008545:115292:1348071348071358141008Burkholderia cenocepacia HI2424 plasmid 1, complete sequencetranscriptional regulator, AraC family1e-0964.3
NC_008061:2153495:2153495215349521545021008Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, AraC family1e-0964.3
NC_015410:3093465:315460531546053155408804Pseudomonas mendocina NK-01 chromosome, complete genomeDNA-binding transcriptional activator FeaR3e-0962.8
NC_010557:679656:7013457013457023731029Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, AraC family3e-0962.8
NC_008392:1029134:1032894103289410339191026Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, AraC family4e-0962.4
NC_011881:89705:1018661018661028671002Arthrobacter chlorophenolicus A6 plasmid pACHL02, completetranscriptional regulator, AraC family5e-0962.4
NC_010676:2975572:298379829837982984772975Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, AraC family7e-0961.6
NC_014834:3472000:348281634828163483802987Rhodopseudomonas palustris DX-1 chromosome, complete genomeAraC family transcriptional regulator8e-0961.6
NC_011000:2831183:284490528449052845858954Burkholderia cenocepacia J2315 chromosome 1, complete sequenceAraC family regulatory protein1e-0860.8
NC_014973:4174668:419493541949354195723789Geobacter sp. M18 chromosome, complete genomeAraC family transcriptional regulator1e-0860.8
NC_015376:903939:9248399248399258911053Burkholderia gladioli BSR3 chromosome chromosome 2, completeAraC family transcriptional regulator2e-0860.5
NC_008258:2542863:2543768254376825448201053Shigella flexneri 5 str. 8401, complete genomeputative ARAC-type regulatory protein2e-0860.1
NC_007802:3807500:3819336381933638203491014Jannaschia sp. CCS1, complete genometranscriptional regulator, AraC family3e-0859.7
NC_016627:1485799:152182415218241522717894Clostridium clariflavum DSM 19732 chromosome, complete genomeDNA-binding domain-containing protein3e-0859.3
NC_015559:3511231:351357435135743514419846Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeAraC family transcriptional regulator5e-0858.9
NC_009663:946285:951154951154952008855Sulfurovum sp. NBC37-1, complete genomeAraC family transcriptional regulator5e-0858.9
NC_010468:1343228:1361194136119413622461053Escherichia coli ATCC 8739, complete genometranscriptional regulator, AraC family5e-0858.9
NC_007511:3512100:3512100351210035131341035Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, AraC family4e-0858.9
NC_020302:85821:134949134949135863915Corynebacterium halotolerans YIM 70093 = DSM 44683, completetranscriptional regulator, AraC family protein6e-0858.5
NC_009952:2381601:240977624097762410660885Dinoroseobacter shibae DFL 12, complete genomeputative transcriptional regulator9e-0858.2
NC_008319:1950889:196094019609401961896957Synechococcus sp. CC9311, complete genometranscriptional regulator, araC family domain protein9e-0858.2
NC_017328:2586171:258770325877032588329627Shigella flexneri 2002017 chromosome, complete genomeEthanolamine operon regulatory protein9e-0858.2
NC_012982:2730000:274518827451882746102915Hirschia baltica ATCC 49814, complete genometranscriptional regulator, AraC family9e-0858.2
NC_010805:1642978:1668352166835216693561005Burkholderia multivorans ATCC 17616 chromosome 2, completeAraC family transcriptional regulator8e-0858.2
NC_016002:2652500:2664380266438026653991020Pseudogulbenkiania sp. NH8B, complete genomeAraC family transcriptional regulator1e-0757.8
NC_017986:4790482:481891148189114819822912Pseudomonas putida ND6 chromosome, complete genomeputative AraC family transcriptional regulator1e-0757.4
NC_004741:2526421:252820025282002528760561Shigella flexneri 2a str. 2457T, complete genomeputative ARAC-type regulatory protein1e-0757.4
NC_007963:3225306:324604832460483247004957Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, AraC family1e-0757.4
NC_004663:2935060:295745829574582958405948Bacteroides thetaiotaomicron VPI-5482, complete genometranscriptional regulator2e-0757
NC_016935:2256000:227476222747622275592831Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator2e-0757
NC_016048:184500:192415192415193263849Oscillibacter valericigenes Sjm18-20, complete genomeputative AraC family transcriptional regulator2e-0757
NC_012004:1053682:1068444106844410696071164Streptococcus uberis 0140J, complete genomeAraC family regulatory protein2e-0757
NC_009921:7249249:725775972577597258187429Frankia sp. EAN1pec, complete genometranscriptional regulator, AraC family2e-0756.6
NC_015690:1726000:174471817447181745548831Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator2e-0756.6
NC_013510:1:135481354813967420Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, AraC family3e-0756.2
NC_007802:4071006:407474240747424075740999Jannaschia sp. CCS1, complete genometranscriptional regulator, AraC family3e-0756.2
NC_007435:566436:5857705857705871971428Burkholderia pseudomallei 1710b chromosome II, complete sequenceHrpB8e-0755.1
NC_009078:1841023:1858480185848018599311452Burkholderia pseudomallei 1106a chromosome II, complete sequenceHrpB8e-0755.1
NC_016935:2347691:2401895240189524035051611Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein1e-0654.7
NC_009922:2487492:249187424918742492782909Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, AraC family1e-0654.7
NC_012791:2233098:225195022519502252867918Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, AraC family9e-0754.7
NC_009075:1906915:1924372192437219258231452Burkholderia pseudomallei 668 chromosome II, complete sequenceHrpB8e-0754.7
NC_006351:1886475:1905540190554019069911452Burkholderia pseudomallei K96243 chromosome 2, complete sequenceAraC family regulator of pathogenicity genes8e-0754.7
NC_014206:3391352:3391352339135233929441593Geobacillus sp. C56-T3 chromosome, complete genomeAraC family transcriptional regulator1e-0654.3
NC_009654:4624459:463007746300774630919843Marinomonas sp. MWYL1, complete genomeAraC family transcriptional regulator1e-0654.3
NC_015690:1818333:1872120187212018737301611Paenibacillus mucilaginosus KNP414 chromosome, complete genomeYbbB1e-0654.3
NC_010623:1961685:1973975197397519750391065Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, AraC family1e-0654.3
NC_013730:2799287:281495228149522815887936Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family1e-0653.9
NC_008319:262894:273633273633274598966Synechococcus sp. CC9311, complete genomeprobable transcriptional regulator, AraC family, putative1e-0653.9
NC_019960:469412:4852914852914874922202Prevotella dentalis DSM 3688 chromosome 1, complete sequenceDNA-binding domain-containing protein, AraC-type2e-0653.5
NC_015732:3105649:310866331086633109505843Spirochaeta caldaria DSM 7334 chromosome, complete genomeAraC family transcriptional regulator2e-0653.5
NC_011757:517000:530059530059530844786Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, AraC family2e-0653.5
NC_020453:7826358:785191078519107852845936Agromonas oligotrophica S58 DNA, complete genomeAraC family transcriptional regulator3e-0653.1
NC_016631:4384251:440042944004294401298870Granulicella mallensis MP5ACTX8 chromosome, complete genomeAraC family transcriptional regulator3e-0653.1
NC_009486:1737703:174171917417191742618900Thermotoga petrophila RKU-1 chromosome, complete genomeAraC-like transcriptional regulator4e-0652.8
NC_006511:1273162:128151612815161282367852Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative transcriptional regulator3e-0652.8
NC_011147:1267005:127535912753591276210852Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator3e-0652.8
NC_016631:3245501:325872632587263259574849Granulicella mallensis MP5ACTX8 chromosome, complete genomeAraC family transcriptional regulator4e-0652.4
NC_015172:1195782:1216032121603212176241593Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometranscriptional regulator, AraC family4e-0652.4
NC_003198:1336894:134525413452541346105852Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative transcriptional regulator5e-0652.4
NC_004631:1623511:163507716350771635928852Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative transcriptional regulator5e-0652.4
NC_011094:1726000:173757617375761738427852Salmonella enterica subsp. enterica serovar Schwarzengrund strregulatory protein5e-0652.4
NC_003197:1753663:176439617643961765253858Salmonella typhimurium LT2, complete genomeputative regulatory protein6e-0652
NC_013929:3600343:361090536109053611753849Streptomyces scabiei 87.22 chromosome, complete genomecellobiose-dependent regulator TxtR6e-0652
NC_003228:2473956:248823224882322489044813Bacteroides fragilis NCTC 9343, complete genomeputative AraC family transcriptional regulatory protein6e-0652
NC_016776:2549465:256302525630252563837813Bacteroides fragilis 638R, complete genomeAraC family transcriptional regulator6e-0652
NC_016641:3058571:307417930741793075060882Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional activator ramA6e-0652
NC_016860:1752000:176209317620931762944852Salmonella enterica subsp. enterica serovar Typhimurium strputative regulatory protein5e-0652
NC_000911:15937:206152061521595981Synechocystis sp. PCC 6803, complete genomeregulatory protein; PchR5e-0652
NC_011080:1750000:176075417607541761605852Salmonella enterica subsp. enterica serovar Newport str. SL254,putative regulatory protein5e-0652
NC_007952:3196085:323128132312813232249969Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, AraC family5e-0652
NC_017277:15937:206152061521595981Synechocystis sp. PCC 6803, complete genomeregulatory protein PchR5e-0652
NC_017052:15937:206152061521595981Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeregulatory protein PchR5e-0652
NC_017039:15937:206152061521595981Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeregulatory protein PchR5e-0652
NC_011149:1429523:143788214378821438733852Salmonella enterica subsp. enterica serovar Agona str. SL483,putative regulatory protein5e-0652
NC_007513:1503955:151547915154791516435957Synechococcus sp. CC9902, complete genometranscriptional regulator, AraC family7e-0651.6
NC_009142:4046376:405719240571924057635444Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, AraC family7e-0651.6
NC_015065:162317:202038202038202922885Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequencetranscriptional regulator, AraC family9e-0651.6
NC_011830:1923158:193510919351091935930822Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, AraC family9e-0651.2
NC_020063:4653422:465342246534224654258837Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain9e-0651.2