Pre_GI Gene

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Host: NC_007951 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007951:3655088 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
36550883656071984Transcriptional regulator AraC familyQuickGO ontologyBLASTP
365672236580111290Transposase TnpAQuickGO ontologyBLASTP
36582173658795579hypothetical proteinBLASTP
365889436603301437Putative transposase proteinQuickGO ontologyBLASTP
36603273661184858Putative general secretion pathway protein ATPaseQuickGO ontologyBLASTP
36611863661401216hypothetical proteinBLASTP
36614513661972522Lipoprotein signal peptidase LspAQuickGO ontologyBLASTP
36619763662872897heavy metal efflux pump CDF familyQuickGO ontologyBLASTP
36629683663375408Transcriptional regulator MerR familyQuickGO ontologyBLASTP
36636673664659993Putative ABC transporter periplasmic ligand binding proteinQuickGO ontologyBLASTP
36648963665798903Putative dehydrogenaseoxidoreductase proteinQuickGO ontologyBLASTP
36658133666127315hypothetical proteinBLASTP
36661403667069930Putative dioxygenaseQuickGO ontologyBLASTP
36670713667451381hypothetical proteinBLASTP
36674643668408945Putative fumarylacetoacetate FAA hydrolaseQuickGO ontologyBLASTP
36684403668844405ABC branched chain amino acid family transporter periplasmic ligand binding proteinQuickGO ontologyBLASTP
36688063669132327Transcriptional regulator IclR familyQuickGO ontologyBLASTP
36694523669982531Ortho-halobenzoate-12-dioxygenase beta subunitQuickGO ontologyBLASTP
367002336713091287Ortho-halobenzoate 12-dioxygenase alpha subunitQuickGO ontologyBLASTP
367154636728351290Transposase TnpAQuickGO ontologyBLASTP
36728573673369513Lipoprotein signal peptidase LspAQuickGO ontologyBLASTP
36733733674269897heavy metal efflux pump CDF familyQuickGO ontologyBLASTP
36743653674772408Transcriptional regulator MerR familyQuickGO ontologyBLASTP
367507136763331263ring hydroxylating dioxygenase alpha subunitQuickGO ontologyBLASTP
36763363676815480Aromatic-ring-hydroxylating dioxygenase beta subunitQuickGO ontologyBLASTP
36769133677890978Vanillate O-demethylase reductase subunit VanBQuickGO ontologyBLASTP
367809536794801386Major facilitator superfamily aromatic acidH symporterQuickGO ontologyBLASTP
36795423679886345hypothetical proteinBLASTP
368009536820261932Putative phage integraseQuickGO ontologyBLASTP
3682253368232876tRNA-GlyQuickGO ontology
36825413683167627CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseQuickGO ontologyBLASTP
368329036855512262Excinuclease ABC C subunitQuickGO ontologyBLASTP
368575736869501194hypothetical proteinBLASTP
36873513687908558Elongation factor P EF-PQuickGO ontologyBLASTP
36881903688396207hypothetical proteinBLASTP