Pre_GI: BLASTP Hits

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Query: NC_007384:2251792:2256210 Shigella sonnei Ss046, complete genome

Start: 2256210, End: 2256998, Length: 789

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:2341127:234554523455452346333789Shigella sonnei 53G, complete genomehydroxyethylthiazole kinase2e-131468
NC_011741:2239637:224405522440552244843789Escherichia coli IAI1 chromosome, complete genomehydroxyethylthiazole kinase9e-130462
CP002185:2347413:235310523531052353893789Escherichia coli W, complete genomehydoxyethylthiazole kinase9e-130462
CU928160:2239637:224405522440552244843789Escherichia coli IAI1 chromosome, complete genomehydoxyethylthiazole kinase9e-130462
NC_000913:2180855:218253521825352183323789Escherichia coli K12, complete genomehydroxyethylthiazole kinase2e-129461
NC_009800:2225182:222686222268622227650789Escherichia coli HS, complete genomehydroxyethylthiazole kinase2e-129461
AC_000091:2185369:218784721878472188635789Escherichia coli W3110 DNA, complete genomehydoxyethylthiazole kinase2e-129461
NC_010468:1694729:170969617096961710484789Escherichia coli ATCC 8739, complete genomeHydroxyethylthiazole kinase2e-129461
NC_010473:2267851:227354322735432274331789Escherichia coli str. K-12 substr. DH10B, complete genomehydoxyethylthiazole kinase2e-129461
NC_012759:2069326:207501820750182075806789Escherichia coli BW2952 chromosome, complete genomehydroxyethylthiazole kinase2e-129461
NC_013008:2851342:285382028538202854608789Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehydroxyethylthiazole kinase5e-129460
NC_011353:2852362:285484028548402855628789Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehydroxyethylthiazole kinase5e-129460
NC_002695:2854629:285804628580462858834789Escherichia coli O157:H7 str. Sakai, complete genomehydroxyethylthiazole kinase5e-129460
NC_002655:2925787:292826529282652929053789Escherichia coli O157:H7 EDL933, complete genomehydroxyethylthiazole kinase2e-128458
NC_004741:2169877:217156021715602172348789Shigella flexneri 2a str. 2457T, complete genomehydroxyethylthiazole kinase6e-128456
NC_004337:2185282:219003621900362190824789Shigella flexneri 2a str. 301, complete genomehydroxyethylthiazole kinase6e-128456
NC_008258:2190635:219231821923182193106789Shigella flexneri 5 str. 8401, complete genomehydoxyethylthiazole kinase6e-128456
NC_017328:2225418:223092622309262231714789Shigella flexneri 2002017 chromosome, complete genomehydroxyethylthiazole kinase6e-128456
NC_011750:955451:970980970980971768789Escherichia coli IAI39 chromosome, complete genomehydroxyethylthiazole kinase5e-123440
NC_011745:2399313:240373124037312404519789Escherichia coli ED1a chromosome, complete genomehydroxyethylthiazole kinase9e-122436
NC_011740:2220251:223561922356192236407789Escherichia fergusonii ATCC 35469, complete genomeHydroxyethylthiazole kinase (4-methyl-5-beta-hydroxyethylthiazole kinase) (Thz kinase) (TH kinase)2e-99361
NC_009792:642881:655660655660656448789Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein5e-89327
NC_003198:2179688:220663122066312207428798Salmonella enterica subsp. enterica serovar Typhi str. CT18,hydroxyethylthiazole kinase2e-86318
NC_011149:2179592:220663822066382207435798Salmonella enterica subsp. enterica serovar Agona str. SL483,hydroxyethylthiazole kinase1e-85316
NC_006905:2235607:226356622635662264363798Salmonella enterica subsp. enterica serovar Choleraesuis strhydroxyethylthiazole kinase7e-85313
NC_014121:3483976:349006934900693490839771Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehydroxyethylthiazole kinase2e-84311
NC_015968:3053565:307108330710833071853771Enterobacter asburiae LF7a chromosome, complete genomeHydroxyethylthiazole kinase2e-83308
NC_012731:3593000:359500135950013595774774Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehydroxyethylthiazole kinase8e-77286
NC_013421:1397841:141095014109501411744795Pectobacterium wasabiae WPP163, complete genomeHydroxyethylthiazole kinase2e-75282
NC_013592:3397304:340027034002703401064795Dickeya dadantii Ech586, complete genomeHydroxyethylthiazole kinase1e-71269
NC_014500:3519722:352180735218073522601795Dickeya dadantii 3937 chromosome, complete genomehydroxyethylthiazole kinase6e-71267
NC_012691:241404:246078246078246881804Tolumonas auensis DSM 9187, complete genomehydroxyethylthiazole kinase5e-65247
NC_012489:4336790:435781743578174358650834Gemmatimonas aurantiaca T-27, complete genomehydroxyethylthiazole kinase8e-43173
NC_013174:1254874:125487412548741255647774Jonesia denitrificans DSM 20603, complete genomeHydroxyethylthiazole kinase3e-41168
NC_015144:1453500:147132214713221472125804Weeksella virosa DSM 16922 chromosome, complete genomehydroxyethylthiazole kinase7e-34144
NC_020911:4428000:444528344452834446071789Octadecabacter antarcticus 307, complete genomehydroxyethylthiazole kinase ThiM3e-32138
NC_007644:2099878:210371621037162104519804Moorella thermoacetica ATCC 39073, complete genomehydroxyethylthiazole kinase6e-32137
NC_004193:375416:677948677948678730783Oceanobacillus iheyensis HTE831, complete genomehydroxyethylthiazole kinase4e-31135
NC_015425:2144639:214821021482102149007798Clostridium botulinum BKT015925 chromosome, complete genomehydroxyethylthiazole kinase2e-30132
NC_013517:1249466:125908012590801259910831Sebaldella termitidis ATCC 33386, complete genomehydroxyethylthiazole kinase2e-30132
NC_015732:191554:193190193190194014825Spirochaeta caldaria DSM 7334 chromosome, complete genomeHydroxyethylthiazole kinase9e-30130
NC_009664:1434974:143646014364601437287828Kineococcus radiotolerans SRS30216, complete genomeHydroxyethylthiazole kinase9e-30130
NC_013665:1123943:112314611231461123946801Methanocella paludicola SANAE, complete genomehydroxyethylthiazole kinase1e-28127
NC_004193:375416:502076502076502849774Oceanobacillus iheyensis HTE831, complete genomehydroxyethylthiazole kinase9e-29127
NC_016627:4159406:415940641594064160242837Clostridium clariflavum DSM 19732 chromosome, complete genomehydroxyethylthiazole kinase, sugar kinase family7e-29127
NC_008525:606986:613850613850614647798Pediococcus pentosaceus ATCC 25745, complete genomeHydroxyethylthiazole kinase, sugar kinase family4e-28124
NC_008593:1917118:192196119219611922758798Clostridium novyi NT, complete genomehydroxyethylthiazole kinase5e-28124
NC_014804:401313:420987420987421787801Thermococcus barophilus MP chromosome, complete genomehydroxyethylthiazole kinase5e-27121
NC_016628:537137:572147572147572941795Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceHydroxyethylthiazole kinase (4-methyl-5-beta-hydroxyethylthiazole kinase) (Thz kinase) (TH kinase)7e-26117
NC_013216:1748241:174905417490541749863810Desulfotomaculum acetoxidans DSM 771, complete genomehydroxyethylthiazole kinase1e-25117
NC_013790:2337000:235152423515242352438915Methanobrevibacter ruminantium M1 chromosome, complete genomehydroxyethylthiazole kinase ThiM6e-25114
NC_014364:773500:790246790246791052807Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeHydroxyethylthiazole kinase6e-25114
NC_014160:719408:737625737625738449825Thermosphaera aggregans DSM 11486 chromosome, complete genomehydroxyethylthiazole kinase1e-23110
NC_009513:1065704:106492310649231065732810Lactobacillus reuteri F275, complete genomeHydroxyethylthiazole kinase1e-21103
NC_016027:3038943:304213930421393042972834Gluconacetobacter xylinus NBRC 3288, complete genomehydroxyethylthiazole kinase3e-2098.6
NC_012032:448161:473525473525474334810Chloroflexus sp. Y-400-fl, complete genomeHydroxyethylthiazole kinase9e-2097.4
NC_010175:448020:473383473383474192810Chloroflexus aurantiacus J-10-fl, complete genomeHydroxyethylthiazole kinase9e-2097.4
NC_015275:3407358:340735834073583408182825Clostridium lentocellum DSM 5427 chromosome, complete genomeHydroxyethylthiazole kinase2e-1995.9