Pre_GI: BLASTP Hits

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Query: NC_007384:1763375:1763375 Shigella sonnei Ss046, complete genome

Start: 1763375, End: 1763725, Length: 351

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:1839739:184136118413611841711351Shigella sonnei 53G, complete genomehypothetical protein9e-64241
NC_016822:267758:2872402872402883761137Shigella sonnei 53G, complete genomereceptor7e-55212
NC_007384:278810:2883882883882895241137Shigella sonnei Ss046, complete genomeputative receptor7e-55212
NC_011353:261220:2752132752132763491137Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeISEc3, transposase2e-54211
NC_013008:261226:2752132752132763491137Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase2e-54211
NC_013941:261094:2751242751242762601137Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeISEc3, transposase2e-54211
NC_007384:1763375:1763928176392817650641137Shigella sonnei Ss046, complete genomeputative receptor1e-54211
NC_016822:1839739:1841914184191418430501137Shigella sonnei 53G, complete genomereceptor1e-54211
NC_011415:2346474:2367226236722623683621137Escherichia coli SE11 chromosome, complete genomeH repeat-associated protein9e-55211
AC_000091:3995233:4014901401490140160371137Escherichia coli W3110 DNA, complete genomepredicted transposase8e-55211
NC_012947:248000:2849742849742861101137Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS4 family protein8e-55211
NC_012967:3549880:3555066355506635562021137Escherichia coli B str. REL606 chromosome, complete genomeputative transposase8e-55211
NC_010468:2406387:2422154242215424232901137Escherichia coli ATCC 8739, complete genometransposase IS4 family protein8e-55211
NC_010468:3209326:3217156321715632182921137Escherichia coli ATCC 8739, complete genometransposase IS4 family protein8e-55211
NC_010468:3209326:321626432162643217025762Escherichia coli ATCC 8739, complete genometransposase IS4 family protein2e-54210
NC_011751:256830:2715242715242726601137Escherichia coli UMN026 chromosome, complete genomeputative transposase3e-54210
NC_011751:256830:268336268336269295960Escherichia coli UMN026 chromosome, complete genomeputative transposase4e-54209
NC_011751:680417:7012057012057023411137Escherichia coli UMN026 chromosome, complete genomeputative transposase3e-54209
AC_000091:1521976:1533530153353015346661137Escherichia coli W3110 DNA, complete genomehypothetical protein9e-54208
NC_010473:1607646:1620435162043516215711137Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein9e-54208
NC_000913:1517051:1529840152984015309761137Escherichia coli K12, complete genomehypothetical protein9e-54208
NC_012759:1409086:1421899142189914230351137Escherichia coli BW2952 chromosome, complete genomehypothetical protein9e-54208
NC_013941:733286:7540237540237551591137Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeISEc4, transposase8e-54208
NC_002655:261236:2726532726532737891137Escherichia coli O157:H7 EDL933, complete genomehypothetical protein7e-54208
NC_002695:261235:2726522726522737881137Escherichia coli O157:H7 str. Sakai, complete genomeH repeat-associated protein7e-54208
AP010958:604719:6257776257776269131137Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative H repeat-associated protein1e-53207
NC_013353:604719:6257776257776269131137Escherichia coli O103:H2 str. 12009, complete genomeH repeat-associated protein1e-53207
NC_013361:649518:6696096696096707451137Escherichia coli O26:H11 str. 11368 chromosome, complete genomeH repeat-associated protein1e-53207
NC_011415:644811:6660146660146671501137Escherichia coli SE11 chromosome, complete genomeH repeat-associated protein1e-53207
NC_011740:1494796:150270115027011503672972Escherichia fergusonii ATCC 35469, complete genome5e-53206
NC_010468:2406387:241067824106782411469792Escherichia coli ATCC 8739, complete genometransposase IS4 family protein2e-52204
NC_010658:1090104:110224611022461103082837Shigella boydii CDC 3083-94, complete genome3e-52203
CP002185:794732:808862808862809623762Escherichia coli W, complete genome1e-51201
NC_013941:2544569:255247725524772553100624Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase IS4 family protein1e-51201
CU928160:256932:2767662767662778271062Escherichia coli IAI1 chromosome, complete genomeputative transposase7e-49192
NC_011741:256932:2767662767662778271062Escherichia coli IAI1 chromosome, complete genomeputative transposase7e-49192
NC_012967:707083:718985718985719746762Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein1e-46184
NC_012947:3077922:308486030848603085621762Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS4 family protein1e-46184
NC_012912:3853377:3865595386559538667281134Dickeya zeae Ech1591, complete genometransposase IS4 family protein6e-45179
NC_012912:3853377:3869001386900138701341134Dickeya zeae Ech1591, complete genometransposase IS4 family protein1e-44177
NC_006370:1810842:181328218132821814142861Photobacterium profundum SS9 chromosome 1, complete sequencePutative transposase3e-36150
NC_016822:267758:283543283543283821279Shigella sonnei 53G, complete genomereceptor4e-36149
NC_007384:1763375:177514317751431776138996Shigella sonnei Ss046, complete genomeH-repeat-associated protein-like protein7e-34142
NC_016822:1839739:185391018539101854905996Shigella sonnei 53G, complete genomeH repeat-containing protein7e-34142
CU928160:256932:268579268579269544966Escherichia coli IAI1 chromosome, complete genomeputative transposase5e-33139
NC_011741:256932:268579268579269544966Escherichia coli IAI1 chromosome, complete genomeputative transposase5e-33139
NC_013941:261094:2786692786692798411173Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase yncI6e-32135
NC_013008:261226:2787582787582799301173Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein6e-32135
NC_011353:261220:2787582787582799301173Escherichia coli O157:H7 str. EC4115 chromosome, complete genometransposase, IS4 family6e-32135
NC_002655:261236:2761982761982773701173Escherichia coli O157:H7 EDL933, complete genomehypothetical protein6e-32135
NC_002695:261235:2761972761972773691173Escherichia coli O157:H7 str. Sakai, complete genomeputative H repeat-associated protein6e-32135
NC_015633:413587:434719434719435318600Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase3e-31133
CU928160:256932:275462275462276208747Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein3e-31133
NC_011741:256932:275462275462276208747Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-31133
NC_000913:1517051:152861015286101529356747Escherichia coli K12, complete genomehypothetical protein3e-31133
AC_000091:1521976:153230015323001533046747Escherichia coli W3110 DNA, complete genomehypothetical protein3e-31133
NC_010473:1607646:1619205161920516202581054Escherichia coli str. K-12 substr. DH10B, complete genome5e-31132
NC_008253:257059:269074269074269304231Escherichia coli 536, complete genome1e-29127
NC_015554:2505437:2514707251470725158281122Alteromonas sp. SN2 chromosome, complete genometransposase, putative6e-27119
CP002185:794732:808482808482808736255Escherichia coli W, complete genomeputative rhs C-terminal tip9e-27118
NC_014228:3591758:361292636129263613531606Xenorhabdus nematophila ATCC 19061, complete genome2e-25114
NC_009783:1665610:1676475167647516775961122Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein2e-25114
NC_013892:1890500:1965086196508619662071122Xenorhabdus bovienii SS-2004 chromosome, complete genometransposase8e-25112
NC_018012:1274500:1285537128553712866611125Thiocystis violascens DSM 198 chromosome, complete genometransposase3e-24110
NC_015186:2197236:2219143221914322202761134Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element3e-22103
NC_015186:2197236:2269817226981722709501134Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element3e-22103
NC_015186:2197236:2229076222907622302091134Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element3e-22103
NC_015186:2719645:2736108273610827372411134Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element3e-22103
NC_009997:685726:6978206978206989291110Shewanella baltica OS195, complete genometransposase IS4 family protein2e-2098.2
NC_009665:639914:6603886603886614971110Shewanella baltica OS185 chromosome, complete genometransposase IS4 family protein2e-2098.2
NC_009665:639914:6635146635146646231110Shewanella baltica OS185 chromosome, complete genometransposase IS4 family protein2e-2098.2
NC_011663:4579777:4591845459184545929541110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2098.2
NC_011663:674069:6975406975406986491110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2098.2
NC_009997:685726:6857266857266868351110Shewanella baltica OS195, complete genometransposase IS4 family protein2e-2097.8
NC_009665:639914:6514386514386525471110Shewanella baltica OS185 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_011663:1159070:1171345117134511724541110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_011663:1500772:1501075150107515021841110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_011663:1627220:1639647163964716407561110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_011663:180889:1927861927861938951110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_011663:180889:1951391951391962481110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_011663:3818886:3820033382003338211421110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_011663:4943179:4950779495077949518881110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_011663:674069:6855996855996867081110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_011663:727500:7506327506327517411110Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_016901:680870:6808706808706819791110Shewanella baltica OS678 chromosome, complete genometransposase IS4 family protein2e-2097.8
NC_014844:92148:9214892148932651118Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome4e-2096.7
NC_007954:1324062:1348575134857513496991125Shewanella denitrificans OS217, complete genometransposase, IS44e-2096.7
NC_014844:3538432:3550829355082935519471119Desulfovibrio aespoeensis Aspo-2 chromosome, complete genometransposase IS4 family protein7e-2095.9
NC_020908:4550414:4562409456240945635451137Octadecabacter arcticus 238, complete genomeISAs1 family transposase2e-1787.8
NC_018012:598724:6243626243626255461185Thiocystis violascens DSM 198 chromosome, complete genometransposase5e-1786.3
NC_018012:4221612:4231929423192942331131185Thiocystis violascens DSM 198 chromosome, complete genometransposase5e-1786.3
NC_018012:4054000:4064606406460640657901185Thiocystis violascens DSM 198 chromosome, complete genometransposase5e-1786.3
NC_018012:3300000:3303912330391233050961185Thiocystis violascens DSM 198 chromosome, complete genometransposase5e-1786.3
NC_018012:1789028:1797399179739917985831185Thiocystis violascens DSM 198 chromosome, complete genometransposase5e-1786.3
NC_020908:4550414:4553030455303045541661137Octadecabacter arcticus 238, complete genomeISAs1 family transposase7e-1785.9
NC_008786:3323167:334269133426913343329639Verminephrobacter eiseniae EF01-2, complete genometransposase (IS4)2e-1684.7
NC_009997:726840:7435747435747446741101Shewanella baltica OS195, complete genometransposase IS4 family protein3e-1683.6
NC_009665:693478:7092477092477103471101Shewanella baltica OS185 chromosome, complete genometransposase IS4 family protein3e-1683.6
NC_011663:4943179:4959587495958749606871101Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein3e-1683.6
NC_011663:727500:7432847432847443841101Shewanella baltica OS223 chromosome, complete genometransposase IS4 family protein3e-1683.6
NC_016901:724000:7399507399507410501101Shewanella baltica OS678 chromosome, complete genometransposase IS4 family protein3e-1683.6
NC_013860:171235:1767521767521780111260Azospirillum sp. B510 plasmid pAB510f, complete sequencetransposase2e-1581.3
NC_013857:478000:4974884974884986181131Azospirillum sp. B510 plasmid pAB510c, complete sequencetransposase3e-1580.5
NC_011026:2269986:2296107229610722972431137Chloroherpeton thalassium ATCC 35110, complete genometransposase IS4 family protein3e-1580.1
NC_011026:1681852:1700500170050017016361137Chloroherpeton thalassium ATCC 35110, complete genometransposase IS4 family protein3e-1580.1
NC_019892:5171629:5179336517933651804631128Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase5e-1579.7
NC_006513:2526843:2545520254552025469951476Azoarcus sp. EbN1, complete genomeputative transposase (IS4, fragment)2e-1477.8
NC_006513:38818:4516945169462931125Azoarcus sp. EbN1, complete genometransposase (IS4)3e-1477.4
NC_006513:38818:5166351663527871125Azoarcus sp. EbN1, complete genometransposase (IS4)3e-1477.4
NC_006513:38818:4278842788438941107Azoarcus sp. EbN1, complete genometransposase (IS4)3e-1477.4
NC_019940:2236630:225224022522402252494255Thioflavicoccus mobilis 8321 chromosome, complete genome3e-1477
NC_009727:766000:7710007710007721441145Coxiella burnetii Dugway 7E9-12, complete genome1e-1375.1
NC_011662:1:3310833108342531146Thauera sp. MZ1T, complete genometransposase IS4 family protein2e-1374.7
NC_011740:1494796:150566215056621505844183Escherichia fergusonii ATCC 35469, complete genome6e-1372.8
NC_013854:2714033:2722864272286427239581095Azospirillum sp. B510, complete genometransposase2e-1271.2
NC_016445:2663837:268626526862652686969705Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein9e-1268.9
NC_019892:5171629:5195683519568351968431161Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase5e-1166.2
NC_019892:7734519:7745553774555377467131161Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase5e-1166.2
NC_019892:7822000:7853800785380078549601161Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase5e-1166.2
NC_016445:2663837:268606126860612686258198Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein7e-1165.9
NC_009457:2764972:278719627871962787393198Vibrio cholerae O395 chromosome 2, complete sequence7e-1165.9
NC_019892:865500:8821068821068832511146Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase4e-1063.5
NC_019892:376000:3828543828543839991146Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase4e-1063.5
NC_007296:1699466:1703054170305417041961143Streptococcus pyogenes MGAS6180, complete genometransposase6e-1062.8
NC_017040:1553624:1557206155720615583391134Streptococcus pyogenes MGAS15252 chromosome, complete genomeIS1548-like transposase1e-0962
NC_013856:595496:599859599859600311453Azospirillum sp. B510 plasmid pAB510b, complete sequencetransposase6e-0959.7
NC_016822:267758:283822283822284679858Shigella sonnei 53G, complete genomereceptor protein6e-0959.3
NC_007384:278810:286237286237287094858Shigella sonnei Ss046, complete genomeputative receptor protein6e-0959.3
NC_011662:535613:5466275466275477451119Thauera sp. MZ1T, complete genometransposase IS4 family protein8e-0959.3
NC_011742:258746:269847269847270332486Escherichia coli S88 chromosome, complete genometransposase1e-0858.5
NC_008563:258725:269826269826270311486Escherichia coli APEC O1, complete genomeputative transposase1e-0858.5
NC_009997:685726:695456695456695803348Shewanella baltica OS195, complete genomehypothetical protein2e-0858.2
NC_011745:258727:271746271746272147402Escherichia coli ED1a chromosome, complete genomeputative transposase3e-0857.4
NC_006370:1810842:181447418144741814764291Photobacterium profundum SS9 chromosome 1, complete sequencehypothetical transposase1e-0755.5
NC_013194:1631134:1656657165665716577961140Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completetransposase IS4 family protein6e-0753.1
NC_007643:955362:973938973938974273336Rhodospirillum rubrum ATCC 11170, complete genomehypothetical protein9e-0752.4
NC_015385:456000:4681724681724693021131Treponema succinifaciens DSM 2489 chromosome, complete genometransposase IS4 family protein3e-0650.4
NC_015385:965341:9817089817089828381131Treponema succinifaciens DSM 2489 chromosome, complete genometransposase IS4 family protein3e-0650.4
NC_015385:1838268:1840337184033718414701134Treponema succinifaciens DSM 2489 chromosome, complete genome6e-0649.7
NC_015386:125499:1351771351771363081132Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete6e-0649.7