Pre_GI: BLASTP Hits

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Query: NC_006905:3780000:3790303 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 3790303, End: 3790590, Length: 288

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:33109:405654056540849285Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencehypothetical protein2e-40164
NC_014107:171170:198644198644198910267Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,hypothetical protein3e-39160
NC_020181:1344259:136039813603981360664267Enterobacter aerogenes EA1509E, complete genomeFIG032766: hypothetical protein4e-35146
NC_015761:1488807:150493215049321505210279Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-34144
NC_014306:3102000:312397531239753124241267Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein2e-33140
NC_014500:443874:464035464035464307273Dickeya dadantii 3937 chromosome, complete genomeputative cytoplasmic protein1e-2098.6
NC_007607:87000:113078113078113368291Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequencehypothetical protein1e-1685.1
NC_010660:175200:204009204009204311303Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencehypothetical protein1e-1685.1
NC_007608:97092:120130120130120432303Shigella boydii Sb227 plasmid pSB4_227, complete sequencehypothetical protein1e-1685.1
NC_021066:1393750:140395214039521404230279Raoultella ornithinolytica B6, complete genomehypothetical protein2e-1581.3
NC_006625:144929:160927160927161205279Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequencehypothetical protein6e-1579.7
NC_014365:2888897:289193228919322892216285Desulfarculus baarsii DSM 2075 chromosome, complete genomeProtein of unknown function DUF17788e-1579
NC_015942:2060349:206248120624812062753273Acidithiobacillus ferrivorans SS3 chromosome, complete genomehypothetical protein1e-1375.1
NC_010725:1419272:146705814670581467396339Methylobacterium populi BJ001, complete genomeProtein of unknown function DUF17782e-1374.3
NC_016147:1672482:168687416868741687119246Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehypothetical protein2e-1374.3
NC_010998:111052:130559130559130816258Rhizobium etli CIAT 652 plasmid pA, complete sequencehypothetical protein5e-1373.2
NC_010170:1324758:137052213705221370800279Bordetella petrii, complete genomehypothetical protein9e-1372
NC_015186:491930:496572496572496886315Acidiphilium multivorum AIU301, complete genomehypothetical protein2e-1064.7
NC_012721:1686450:169357516935751693856282Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein3e-1063.9
NC_009720:900884:913634913634913933300Xanthobacter autotrophicus Py2, complete genomehypothetical protein6e-0959.7
NC_009668:445134:464488464488464787300Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencehypothetical protein8e-0959.3
NC_014365:2843126:284852028485202848798279Desulfarculus baarsii DSM 2075 chromosome, complete genomeProtein of unknown function DUF17784e-0857
NC_010688:1192410:124273212427321243022291Xanthomonas campestris pv. campestris, complete genomeputative DNA-binding protein3e-0857
NC_007086:1224867:126814712681471268437291Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein3e-0857
NC_003902:3666544:367842936784293678719291Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein3e-0857
NC_017271:3641705:365594136559413656231291Xanthomonas campestris pv. raphani 756C chromosome, completehypothetical protein5e-0856.2
NC_014365:2843126:284945028494502849734285Desulfarculus baarsii DSM 2075 chromosome, complete genomeProtein of unknown function DUF17786e-0856.2
NC_014365:2888897:288967728896772889955279Desulfarculus baarsii DSM 2075 chromosome, complete genomeProtein of unknown function DUF17786e-0856.2
NC_014228:4408500:442126144212614421539279Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein2e-0754.7
NC_007645:5724000:574579557457955746073279Hahella chejuensis KCTC 2396, complete genomehypothetical protein2e-0754.3
NC_014366:2826575:283594628359462836224279Gamma proteobacterium HdN1, complete genomehypothetical protein4e-0753.5
NC_014638:183115:225478225478225765288Bifidobacterium bifidum PRL2010 chromosome, complete genomehypothetical protein9e-0752.4
NC_012912:4012112:402458740245874024880294Dickeya zeae Ech1591, complete genomeProtein of unknown function DUF17781e-0652
NC_016832:4368948:437890743789074379200294Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-0652
NC_004631:4381724:439168343916834391976294Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-0652
NC_003198:4397074:440703344070334407326294Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-0652
NC_014500:564864:581656581656581949294Dickeya dadantii 3937 chromosome, complete genomeputative helix-turn-helix protein, copG family1e-0652
NC_011901:2202690:220636622063662206644279Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein1e-0652
NC_014500:564864:587253587253587546294Dickeya dadantii 3937 chromosome, complete genomeputative helix-turn-helix protein, copG family3e-0650.8
NC_013716:3708415:372185737218573722150294Citrobacter rodentium ICC168, complete genomehypothetical protein2e-0650.8
NC_009484:318500:322246322246322575330Acidiphilium cryptum JF-5 chromosome, complete genomehypothetical protein3e-0650.4
NC_015186:347346:354738354738355040303Acidiphilium multivorum AIU301, complete genomehypothetical protein3e-0650.4
NC_011205:4564645:457660045766004576893294Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-0650.4
NC_011080:4543000:455299445529944553287294Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein3e-0650.4
NC_012880:3982383:400087640008764001169294Dickeya dadantii Ech703, complete genomeProtein of unknown function DUF17783e-0650.4
NC_016845:4539381:456140045614004561693294Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative CopG family helix-turn-helix protein4e-0650.1
NC_017046:4571833:458180145818014582094294Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein5e-0649.7
NC_004547:1062410:106978110697811070074294Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein5e-0649.7
NC_003197:4551880:456256045625604562853294Salmonella typhimurium LT2, complete genomehypothetical protein5e-0649.7
NC_011147:4297513:430952143095214309814294Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-0649.7
NC_011274:4385039:439728543972854397578294Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein5e-0649.7
NC_011294:4409137:441938144193814419674294Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein5e-0649.7
NC_016810:4573172:458314045831404583433294Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-0649.7
NC_016831:4367000:437743043774304377723294Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-0649.7
NC_016856:4563435:457539045753904575683294Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein5e-0649.7
NC_016857:4573173:458314145831414583434294Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein5e-0649.7
NC_016860:4649274:465995446599544660247294Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-0649.7
NC_016863:4513106:452299645229964523289294Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein5e-0649.7
NC_011094:4442478:445247044524704452763294Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein7e-0649.3
NC_007925:3933765:395020939502093950496288Rhodopseudomonas palustris BisB18, complete genomehypothetical protein1e-0548.9