Pre_GI Gene

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Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:4297513 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
42967974297516720DNA-binding transcriptional activator DcuRQuickGO ontologyBLASTP
43019264302552627anaerobic dimethyl sulfoxide reductase subunit BQuickGO ontologyBLASTP
43025454303318774anaerobic dimethyl sulfoxide reductase subunit CQuickGO ontologyBLASTP
43033004304004705hypothetical proteinBLASTP
430406943054691401hypothetical proteinBLASTP
43057734306678906hypothetical proteinBLASTP
43069664307280315hypothetical proteinBLASTP
43073374307534198hypothetical proteinBLASTP
43075574307829273GerE family regulatory proteinQuickGO ontologyBLASTP
43078414308716876araC family transcriptional regulatorQuickGO ontologyBLASTP
43089824309200219hypothetical proteinBLASTP
43095214309814294hypothetical proteinBLASTP
43098114310302492acetyltransferaseQuickGO ontologyBLASTP
43105434311295753nonspecific acid phosphataseQuickGO ontologyBLASTP
4312008431208073tRNA-PheQuickGO ontologyBLASTP
43121964312771576transcriptional regulatorQuickGO ontologyBLASTP
431280843145111704thioldisulfide interchange proteinQuickGO ontologyBLASTP
43144874314834348divalent-cation tolerance protein CutAQuickGO ontologyBLASTP
431495543162561302anaerobic C4-dicarboxylate transporterQuickGO ontologyBLASTP
431637143178071437aspartate ammonia-lyaseQuickGO ontologyBLASTP
43178404317962123hypothetical proteinBLASTP
43181484318624477FxsA proteinQuickGO ontologyBLASTP
431868343198971215inner membrane protein YjeHQuickGO ontologyBLASTP