Pre_GI: BLASTP Hits

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Query: NC_006511:1243817:1259094 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 1259094, End: 1259519, Length: 426

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:1239904:125300312530031253362360Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-66249
NC_015761:1181186:119198911919891192396408Salmonella bongori NCTC 12419, complete genomepertussis-like toxin subunit3e-0960.5
NC_006511:1654959:167091516709151671328414Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative pertussis-like toxin subunit6e-0959.7
NC_011147:1650142:166609816660981666511414Salmonella enterica subsp. enterica serovar Paratyphi A strpertussis-like toxin subunit6e-0959.7
NC_004631:1182883:119244511924451192858414Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative pertussis-like toxin subunit6e-0959.7
NC_003198:1771432:178827417882741788687414Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative pertussis-like toxin subunit6e-0959.7
NC_005810:515744:525941525941526366426Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein2e-0858.2
NC_008149:3790897:380029338002933800718426Yersinia pestis Nepal516, complete genomehypothetical protein2e-0858.2
NC_010465:4222586:422923242292324229657426Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein2e-0858.2
NC_006155:456000:466490466490466915426Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein2e-0858.2
NC_009708:4215500:422531642253164225741426Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein2e-0858.2
NC_014029:331919:341301341301341726426Yersinia pestis Z176003 chromosome, complete genomehypothetical protein2e-0858.2
NC_017154:331921:341304341304341729426Yersinia pestis D106004 chromosome, complete genomehypothetical protein2e-0858.2
NC_017168:751078:760474760474760899426Yersinia pestis A1122 chromosome, complete genomesubtilase cytotoxin subunit B-like protein2e-0858.2
NC_017265:644384:651610651610652035426Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein2e-0858.2
NC_010067:2304313:231678823167882317243456Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein5e-0856.6