Pre_GI Gene

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Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:1650142 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
16501421650732591ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
16507261651523798ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
16515171652329813inner membrane transport proteinQuickGO ontologyBLASTP
16523191653296978inner membrane transport proteinQuickGO ontologyBLASTP
165329316549271635substrate-binding transport proteinQuickGO ontologyBLASTP
16556091655923315lipoproteinQuickGO ontologyBLASTP
16560721656602531cytochromeQuickGO ontologyBLASTP
16566841657601918hypothetical proteinBLASTP
16581341658307174hypothetical proteinBLASTP
16590261659583558outer membrane invasion proteinQuickGO ontologyBLASTP
16599611660089129hypothetical proteinBLASTP
16601751660339165hypothetical proteinBLASTP
16603881660651264outer membrane virulence proteinQuickGO ontologyBLASTP
16607831660995213cold shock proteinQuickGO ontologyBLASTP
16613971661918522lipoproteinQuickGO ontologyBLASTP
16620991662338240virulence proteinQuickGO ontologyBLASTP
16632121664021810toxin-like proteinQuickGO ontologyBLASTP
16640941664471378hypothetical proteinBLASTP
16646191665161543hypothetical proteinBLASTP
16653531666081729pertussis-like toxin subunitQuickGO ontologyBLASTP
16660981666511414pertussis-like toxin subunitQuickGO ontologyBLASTP
16671541667426273hypothetical proteinBLASTP
166745816685821125bacteriophage proteinQuickGO ontologyBLASTP