Pre_GI Gene

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Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:1239904 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
123990412418381935exoribonuclease IIQuickGO ontologyBLASTP
124192712430601134hypothetical proteinBLASTP
12432601244048789enoyl-ACP reductaseQuickGO ontologyBLASTP
12465021247209708hypothetical proteinBLASTP
12472251248031807peptide transport system ATP-binding protein SapFQuickGO ontologyBLASTP
12480331249025993peptide transport system ATP-binding protein SapDQuickGO ontologyBLASTP
12490251249915891peptide transport system permease SapCQuickGO ontologyBLASTP
12500381250439402integraseQuickGO ontologyBLASTP
12507391251623885hypothetical proteinBLASTP
12519331252346414hypothetical proteinBLASTP
12530031253362360hypothetical proteinBLASTP
12541571254294138hypothetical proteinBLASTP
12543261255291966peptide transport system permease SapBQuickGO ontologyBLASTP
125528812569371650peptide transport periplasmic protein SapAQuickGO ontologyBLASTP
12570491258029981phage shock protein operon transcriptional activatorQuickGO ontologyBLASTP
12582001258868669phage shock protein PspAQuickGO ontologyBLASTP
12589281259152225phage shock protein BQuickGO ontologyBLASTP
12591521259511360DNA-binding transcriptional activator PspCQuickGO ontologyBLASTP