Pre_GI: BLASTP Hits

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Query: NC_006511:1063249:1069194 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 1069194, End: 1070035, Length: 842

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016831:1690811:171376217137621714373612Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein7e-95347
NC_010102:1137247:114318211431821144009828Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-84310
NC_011205:1391971:1399187139918714002661080Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853integrase3e-83308
NC_011205:1345511:1351456135145613525351080Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage integrase3e-82305
NC_011080:1944226:1972465197246519735441080Salmonella enterica subsp. enterica serovar Newport str. SL254,phage integrase9e-82303
NC_011294:1220526:1226471122647112275501080Salmonella enterica subsp. enterica serovar Enteritidis strintegrase2e-81302
NC_003197:1945858:196702619670261967922897Salmonella typhimurium LT2, complete genome4e-81301
NC_016810:1903426:192459419245941925490897Salmonella enterica subsp. enterica serovar Typhimurium strIntegrase4e-81301
NC_016856:1957263:197843119784311979327897Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sintegrase4e-81301
NC_016857:1903426:192459419245941925490897Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative phage integrase protein4e-81301
NC_016863:1905454:192662219266221927518897Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative phage integrase protein4e-81301
NC_017046:1902788:192395719239571924853897Salmonella enterica subsp. enterica serovar Typhimurium str. 798Integrase4e-81301
NC_011094:1923870:1945403194540319464821080Salmonella enterica subsp. enterica serovar Schwarzengrund strphage integrase3e-81301
NC_016860:1943203:196260919626091963463855Salmonella enterica subsp. enterica serovar Typhimurium strintegrase6e-81300
NC_011083:1993672:201608920160892016943855Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,integrase6e-81300
NC_010102:1137247:1149438114943811505171080Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-81300
NC_003198:1908238:1932482193248219335581077Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative integrase5e-65247
NC_008258:1873805:1886389188638918874651077Shigella flexneri 5 str. 8401, complete genomeputative phage integrase protein1e-64246
NC_012125:1897611:190354519035451904273729Salmonella enterica subsp. enterica serovar Paratyphi C strainphage integrase protein4e-51201
NC_013850:1887556:1893425189342518945101086Klebsiella variicola At-22 chromosome, complete genomelambda integrase7e-45181
NC_013364:2898964:2916736291673629178061071Escherichia coli O111:H- str. 11128, complete genomeputative integrase2e-35149
NC_011601:1039500:1043517104351710445901074Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase3e-34145
NC_011601:717072:7208917208917219611071Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase7e-34144
NC_013941:975353:9807899807899818591071Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage integrase family8e-34144
NC_012967:786534:7879527879527890221071Escherichia coli B str. REL606 chromosome, complete genomeintegrase8e-34144
NC_011353:1716037:172511817251181725858741Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-33143
NC_013941:1613595:162264716226471623387741Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeintegrase1e-33143
NC_012947:3015985:302838230283823029305924Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completelambda integrase5e-33141
NC_007712:1791766:179714417971441797914771Sodalis glossinidius str. 'morsitans', complete genomeputative phage integrase9e-33140
NC_002655:2264773:228294922829492283650702Escherichia coli O157:H7 EDL933, complete genomeputative integrase fragment6e-32137
NC_007712:1516589:1520735152073515218021068Sodalis glossinidius str. 'morsitans', complete genomephage integrase2e-31136
NC_013364:1997891:201108120110812011473393Escherichia coli O111:H- str. 11128, complete genome3e-31135
NC_013361:1754346:176509417650941765786693Escherichia coli O26:H11 str. 11368 chromosome, complete genome3e-31135
NC_013008:1715831:172409317240931724785693Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeintegrase3e-31135
NC_002695:1794635:180352718035271804219693Escherichia coli O157:H7 str. Sakai, complete genomeintegrase3e-31135
NC_011601:1466496:147555814755581476250693Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome3e-31135
AC_000091:1191353:1201256120125612023831128Escherichia coli W3110 DNA, complete genomepredicted integrase2e-29129
NC_000913:1188999:1198902119890212000291128Escherichia coli K12, complete genomee14 prophage; predicted integrase2e-29129
NC_015062:99969:1087051087051098291125Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencelambda integrase4e-29128
NC_013282:1804909:1812665181266518138131149Cronobacter turicensis, complete genomeProphage lambda integrase1e-28127
NC_013508:1687432:1700197170019717012911095Edwardsiella tarda EIB202, complete genomeputative phage integrase protein3e-28125
NC_017060:59500:1055351055351066591125Rahnella aquatilis HX2 plasmid PRA1, complete sequencelambda integrase5e-28125
NC_014562:983398:9899719899719911161146Pantoea vagans C9-1 chromosome, complete genomeIntegrase8e-28124
NC_012779:1966205:1973860197386019749541095Edwardsiella ictaluri 93-146, complete genomeintegrase2e-27123
NC_012731:2083650:2089612208961220907541143Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeprophage lambda integrase3e-27122
NC_011283:2836000:2907727290772729088661140Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase7e-27121
NC_007712:2897000:2906392290639229075161125Sodalis glossinidius str. 'morsitans', complete genomephage integrase7e-27121
NC_016612:3803130:3809103380910338102301128Klebsiella oxytoca KCTC 1686 chromosome, complete genomesite-specific recombinase, phage integrase family protein5e-27121
NC_011742:1177946:1182443118244311835851143Escherichia coli S88 chromosome, complete genomephage integrase1e-25116
NC_007946:1239278:1241467124146712426091143Escherichia coli UTI89, complete genomeprophage lambda integrase1e-25116
NC_008563:1175035:1178855117885511799971143Escherichia coli APEC O1, complete genomeprophage lambda integrase1e-25116
NC_011751:1405381:1411252141125214123941143Escherichia coli UMN026 chromosome, complete genomephage integrase2e-25116
NC_011080:1944226:195729619572961957808513Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-25116
NC_013364:1997891:1998117199811719992471131Escherichia coli O111:H- str. 11128, complete genomeputative integrase4e-25115
NC_011353:1716037:1737316173731617384461131Escherichia coli O157:H7 str. EC4115 chromosome, complete genomesite-specific recombinase, phage integrase family4e-25115
NC_013008:1715831:1736291173629117374211131Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeintegrase for prophage CP-933O4e-25115
NC_011770:1431740:1433854143385414349571104Pseudomonas aeruginosa LESB58, complete genomephage integrase, putative4e-25115
NC_011748:1408280:1408280140828014094101131Escherichia coli 55989, complete genomephage integrase4e-25115
CU928145:1408280:1408280140828014094101131Escherichia coli 55989 chromosome, complete genomephage integrase4e-25115
NC_009801:1392696:1417903141790314190331131Escherichia coli E24377A, complete genomesite-specific recombinase, phage integrase family6e-25114
NC_013422:1755875:1797967179796717991241158Halothiobacillus neapolitanus c2, complete genomelambda integrase1e-23110
NC_020418:2910593:291768229176822918563882Morganella morganii subsp. morganii KT, complete genomePhage integrase1e-23110
NC_014838:218000:2249612249612261031143Pantoea sp. At-9b plasmid pPAT9B01, complete sequencelambda integrase1e-21103
NC_009832:2211154:222325822232582224040783Serratia proteamaculans 568, complete genomeintegrase family protein1e-21103
NC_012791:2590500:2590574259057425916621089Variovorax paradoxus S110 chromosome 1, complete genomeintegrase family protein3e-1789.4
NC_007650:1192310:1197986119798611991131128Burkholderia thailandensis E264 chromosome II, complete sequenceintegrase-like protein3e-1582.4
NC_011770:2499432:2540392254039225415041113Pseudomonas aeruginosa LESB58, complete genomephage integrase, putative3e-1582.4
NC_010102:1137247:116150011615001161820321Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1170.1
NC_011294:1220526:125758412575841257943360Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-1066.6
NC_017506:2089769:2107666210766621087871122Marinobacter adhaerens HP15 chromosome, complete genomeprophage lambda integrase3e-1065.9
NC_011740:1831845:184836618483661848854489Escherichia fergusonii ATCC 35469, complete genome1e-0860.5
NC_014664:3003633:3019218301921830202761059Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeintegrase family protein1e-0757.4
NC_009778:959982:9698359698359710191185Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein7e-0754.7
NC_015064:2341152:2360406236040623614641059Acidobacterium sp. MP5ACTX9 chromosome, complete genomeintegrase family protein1e-0550.8