Pre_GI: BLASTP Hits

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Query: NC_006177:1422932:1438983 Symbiobacterium thermophilum IAM 14863, complete genome

Start: 1438983, End: 1441064, Length: 2082

Host Lineage: Symbiobacterium thermophilum; Symbiobacterium; Shewanellaceae; Clostridiales; Firmicutes; Bacteria

General Information: This symbiotic and thermophilic bacterium was discovered by screening for thermostable tryptanophases in Japanese compost. Cultured growth of this organism requires the presence of another bacterial species, such as a Bacillus or Escherichia coli, which provides diffusable metabolites required for its growth. Pure cultures can be obtained by growing Symbiobacterium thermophilum in a bioreactor, separated from its symbiotic counterpart by a dialysis membrane. Because of its symbiotic nature, it cannot be cultured with conventional methods. Despite a negative reaction for gram stain, this species is placed with the gram-positive bacteria based on 16s phylogenetic analysis.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011880:56543:6051160511625982088Cyanothece sp. PCC 7425 plasmid pP742501, complete sequenceUvrD/REP helicase2e-123444
NC_009523:2769154:2783054278305427851862133Roseiflexus sp. RS-1 chromosome, complete genomeUvrD/REP helicase7e-118425
NC_005125:2887319:2900009290000929021322124Gloeobacter violaceus PCC 7421, complete genomehypothetical protein2e-110400
NC_011961:891815:9152179152179172412025Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencenerd domain protein3e-57223
NC_012034:6469:3152031520339792460Anaerocellum thermophilum DSM 6725, complete genomeLexA repressor6e-42172
NC_014720:4170:2587325873283322460Caldicellulosiruptor kronotskyensis 2002 chromosome, completelexa repressor2e-39164
NC_008146:861319:8862418862418883522112Mycobacterium sp. MCS, complete genomeUvrD/REP helicase6e-33143
NC_008705:868623:8949708949708970812112Mycobacterium sp. KMS, complete genomeUvrD/REP helicase6e-33143
NC_018524:4235773:4249796424979642519342139Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeuvrD/REP helicase N-terminal domain protein5e-32140
NC_017080:166180:1808561808561829672112Phycisphaera mikurensis NBRC 102666, complete genomeputative helicase4e-32140
NC_006958:748500:7623767623767646762301Corynebacterium glutamicum ATCC 13032, complete genomePUTATIVE DNA HELICASE4e-32140
NC_003450:747000:7609037609037632032301Corynebacterium glutamicum ATCC 13032, complete genomeputative helicase4e-32140
NC_013929:2375613:2431613243161324339072295Streptomyces scabiei 87.22 chromosome, complete genomehelicase1e-31139
NC_008786:4579490:4593935459393545960852151Verminephrobacter eiseniae EF01-2, complete genomeUvrD/REP helicase9e-30132
NC_016111:1484424:1498642149864215009602319Streptomyces cattleya NRRL 8057, complete genomeDNA helicase2e-29131
NC_013216:1442044:1461394146139414635142121Desulfotomaculum acetoxidans DSM 771, complete genomeUvrD/REP helicase2e-29131
NC_009434:3611738:3712833371283337149202088Pseudomonas stutzeri A1501, complete genomeputative DNA helicase4e-29130
NC_008536:2079052:2112674211267421140861413Solibacter usitatus Ellin6076, complete genomeputative DNA helicase1e-28129
NC_018679:1738126:1756438175643817585702133Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeputative DNA helicase5e-28126
NC_017093:6461486:6459294645929464614892196Actinoplanes missouriensis 431, complete genomeputative DNA helicase5e-28126
NC_016010:1247008:1261395126139512634732079Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeSuperfamily I DNA and RNA helicase7e-27122
NC_002695:5381576:5387914538791453900282115Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA helicase5e-26120
NC_011353:5426793:5461562546156254636762115Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeATP-dependent DNA helicase, UvrD/REP family5e-26120
NC_011353:5455224:5461562546156254636762115Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeATP-dependent DNA helicase, UvrD/REP family5e-26120
NC_013008:5382917:5417623541762354197372115Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehelicase5e-26120
NC_013008:5411285:5417623541762354197372115Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehelicase5e-26120
NC_013941:5192500:5226179522617952282932115Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeATP-dependent DNA helicase, UvrD/REP family5e-26120
NC_013941:5219841:5226179522617952282932115Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeATP-dependent DNA helicase, UvrD/REP family5e-26120
NC_010554:2646806:2704877270487727070122136Proteus mirabilis HI4320, complete genomeDNA helicase4e-26120
NC_015576:612164:6325866325866348202235Mycobacterium sp. JDM601 chromosome, complete genomeUvrD/Rep helicase6e-26119
NC_010498:4930649:4936987493698749391012115Escherichia coli SMS-3-5, complete genomeATP-dependent DNA helicase UvrD6e-26119
NC_008740:1484531:1492814149281414948652052Marinobacter aquaeolei VT8, complete genomesuperfamily I DNA and RNA helicase2e-25118
NC_003902:1220600:1233504123350412355822079Xanthomonas campestris pv. campestris str. ATCC 33913, completeputative DNA helicase2e-25117
NC_015064:102224:1055191055191077112193Acidobacterium sp. MP5ACTX9 chromosome, complete genomeUvrD/REP helicase5e-25116
NC_013441:382597:3963933963933985372145Gordonia bronchialis DSM 43247, complete genomeUvrD/REP helicase9e-25115
NC_014210:3248526:3270944327094432730612118Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,UvrD/REP helicase3e-24114
NC_013757:3897413:3909839390983939120972259Geodermatophilus obscurus DSM 43160, complete genomeUvrD/REP helicase3e-24114
NC_008726:6393489:6431952643195264341652214Mycobacterium vanbaalenii PYR-1, complete genomeUvrD/REP helicase2e-24114
NC_008596:1302000:1343125134312513453382214Mycobacterium smegmatis str. MC2 155, complete genomeUvrD/Rep helicase2e-24114
NC_015588:1213873:1233287123328712355662280Isoptericola variabilis 225 chromosome, complete genomehypothetical protein2e-24114
NC_008278:6854759:6868682686868268708412160Frankia alni ACN14a, complete genomeputative DNA helicase7e-23109
NC_007645:5801295:5823205582320558252322028Hahella chejuensis KCTC 2396, complete genomeSuperfamily I DNA and RNA helicase5e-22106
NC_016887:1949927:1949927194992719517831857Nocardia cyriacigeorgica GUH-2, complete genomeputative UvrD/REP helicase9e-21102
NC_017068:1143515:1166667116666711688052139Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative UvrD/REP family DNA helicase2e-20101
NC_020209:4312892:4327643432764343290581416Pseudomonas poae RE*1-1-14, complete genomehypothetical protein3e-1997.4
NC_004722:4405363:4435208443520844366261419Bacillus cereus ATCC 14579, complete genomeSuperfamily I DNA and RNA helicases5e-1996.7
NC_015726:3452232:3455641345564134574731833Cupriavidus necator N-1 chromosome 1, complete sequencehypothetical protein6e-1996.3
NC_003296:140889:1483601483601501981839Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein1e-1792
NC_014310:94645:99969999691018071839Ralstonia solanacearum PSI07 megaplasmid, complete sequencehelicase protein2e-1688.6
NC_011901:1860887:1879189187918918810481860Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeDNA helicase II2e-1687.8
NC_019902:3397170:3401800340180034035691770Thioalkalivibrio nitratireducens DSM 14787, complete genomeDNA helicase II; NERD domain-containing protein3e-1687.8
NC_008260:1885969:1904538190453819064331896Alcanivorax borkumensis SK2, complete genomeHypotetical protein9e-1685.9
NC_014924:3334386:3341593334159333434701878Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeNERD domain protein1e-1585.9
NC_010002:4038500:4045257404525740470621806Delftia acidovorans SPH-1, complete genomeNERD domain protein4e-1583.6
NC_015578:3561838:3561838356183835651973360Treponema primitia ZAS-2 chromosome, complete genomeDNA and RNA helicase6e-1583.2
NC_016935:7872425:7878284787828478802091926Paenibacillus mucilaginosus 3016 chromosome, complete genomeNERD domain-containing protein1e-1482.4
NC_015690:7785875:7806015780601578079401926Paenibacillus mucilaginosus KNP414 chromosome, complete genomeNERD domain-containing protein2e-1481.6
NC_010995:764567:7645677645677664021836Cellvibrio japonicus Ueda107, complete genomeputative DNA helicase II5e-1480.1
NC_007510:973828:9833809833809867033324Burkholderia sp. 383 chromosome 1, complete sequenceSuperfamily I DNA and RNA helicases-like7e-1479.7
NC_011297:1224749:1231122123112212329991878Dictyoglomus thermophilum H-6-12, complete genomeATP-dependent DNA helicase PcrA1e-1379.3
NC_011768:1889853:1899436189943619008391404Desulfatibacillum alkenivorans AK-01, complete genomeSuperfamily I DNA and RNA helicase-like protein2e-1378.6
NC_013716:5201097:5253209525320952550231815Citrobacter rodentium ICC168, complete genomeputative DNA helicase2e-1377.8
NC_011661:1411383:1411383141138314132601878Dictyoglomus turgidum DSM 6724, complete genomeUvrD/REP helicase3e-1377.8
NC_018419:226000:2279972279972301502154Secondary endosymbiont of Ctenarytaina eucalypti chromosome,ATP-dependent DNA helicase UvrD3e-1377.4
NC_012880:3125261:3145876314587631479332058Dickeya dadantii Ech703, complete genomeUvrD/REP helicase4e-1377.4
NC_008278:744777:7563847563847576581275Frankia alni ACN14a, complete genomePutative DNA helicase4e-1377.4
NC_011757:97281:1100421100421110491008Methylobacterium chloromethanicum CM4, complete genomehypothetical protein4e-1377
CU928145:3360967:3398367339836734001541788Escherichia coli 55989 chromosome, complete genomeputative UvrD/REP helicase9e-1375.9
NC_011748:3360967:3398367339836734001541788Escherichia coli 55989, complete genomeputative UvrD/REP helicase9e-1375.9
NC_020210:1275031:1294813129481312964831671Geobacillus sp. GHH01, complete genomehypothetical protein2e-1275.1
NC_006510:1400000:1415631141563114173011671Geobacillus kaustophilus HTA426, complete genomehypothetical protein5e-1273.6
NC_014831:329983:3299833299833323582376Thermaerobacter marianensis DSM 12885 chromosome, complete genomeATP-dependent DNA helicase PcrA5e-1273.6
NC_017200:345502:3455023455023477512250Bacillus thuringiensis serovar finitimus YBT-020 chromosome,ATP-dependent DNA helicase PcrA7e-1273.2
NC_016779:312500:3133533133533156142262Bacillus cereus F837/76 chromosome, complete genomeATP-dependent DNA helicase UvrD/PcrA8e-1272.8
NC_019903:1745849:1745849174584917472641416Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,DNA/RNA helicase1e-1172.4
NC_010718:3039434:3039434303943430416982265Natranaerobius thermophilus JW/NM-WN-LF, complete genomeUvrD/REP helicase2e-1171.2
NC_015660:3518931:3562042356204235642342193Geobacillus thermoglucosidasius C56-YS93 chromosome, completeATP-dependent DNA helicase PcrA4e-1170.5
NC_009615:1067603:1087220108722010895622343Parabacteroides distasonis ATCC 8503 chromosome, complete genomehelicase7e-1169.7
NC_006347:2899653:2906221290622129085812361Bacteroides fragilis YCH46, complete genomeATP-dependent DNA helicase1e-1069.3
NC_014550:615609:6289646289646313422379Arthrobacter arilaitensis Re117, complete genomeATP-dependent DNA helicase PcrA1e-1068.9
NC_003228:2973266:2979834297983429821942361Bacteroides fragilis NCTC 9343, complete genomeputative helicase1e-1068.9
NC_016776:2956444:2997159299715929995192361Bacteroides fragilis 638R, complete genomeputative helicase1e-1068.9
NC_014973:243000:2582002582002603922193Geobacter sp. M18 chromosome, complete genomeUvrD/REP helicase1e-1068.6
NC_011761:2785660:2785660278566027877892130Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeDNA helicase II4e-1067
NC_011206:2685499:2685499268549926876282130Acidithiobacillus ferrooxidans ATCC 53993, complete genomeUvrD/REP helicase4e-1067
NC_016745:3170384:3183733318373331857452013Oceanimonas sp. GK1 chromosome, complete genomeDNA helicase IV7e-1066.6
NC_013223:2279869:2304961230496123071052145Desulfohalobium retbaense DSM 5692, complete genomeUvrD/REP helicase7e-1066.2
NC_018515:3169973:3177608317760831798482241Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent DNA helicase PcrA8e-1066.2
NC_012438:192065:1930181930181951202103Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeATP-dependent DNA helicase PcrA1e-0965.9
NC_014376:1842290:1845537184553718478252289Clostridium saccharolyticum WM1 chromosome, complete genomeUvrD/REP helicase1e-0965.9
NC_018012:3102215:3126846312684631290172172Thiocystis violascens DSM 198 chromosome, complete genomeDNA/RNA helicase1e-0965.5
NC_008209:2367500:2369250236925023720002751Roseobacter denitrificans OCh 114, complete genomehelicase IV1e-0965.5
NC_014253:312354:3422963422963441881893Methanohalobium evestigatum Z-7303 chromosome, complete genomehypothetical protein2e-0964.7
NC_013525:1953920:1968327196832719706662340Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeUvrD/REP helicase2e-0964.7
NC_012982:711122:7184207184207218243405Hirschia baltica ATCC 49814, complete genomeUvrD/REP helicase4e-0963.9
NC_016944:168530:1942241942241963952172Vibrio cholerae IEC224 chromosome I, complete sequenceDNA-dependent helicase II5e-0963.5
NC_014033:1152994:1154615115461511570442430Prevotella ruminicola 23 chromosome, complete genomeputative ATP-dependent DNA helicase PcrA6e-0963.5
NC_015556:130437:1304371304371326382202Pseudomonas fulva 12-X chromosome, complete genomeUvrD/REP helicase5e-0963.5
NC_018720:1186058:1186058118605811885712514Bifidobacterium asteroides PRL2011 chromosome, complete genomeATP-dependent DNA helicase PcrA5e-0963.5
NC_016831:4556761:4568232456823245700731842Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative Type I restriction enzyme5e-0963.5
NC_015499:1403447:1422710142271014245421833Thermodesulfobium narugense DSM 14796 chromosome, complete genomeUvrD/REP helicase5e-0963.5
NC_002505:168532:1942141942141963852172Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeDNA helicase II5e-0963.5
NC_012668:442601:4426014426014447722172Vibrio cholerae MJ-1236 chromosome 1, complete sequenceDNA-dependent helicase II5e-0963.5
NC_016445:2593800:2619482261948226216532172Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA-dependent helicase II5e-0963.5
NC_014829:443500:4665374665374688192283Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeATP-dependent DNA helicase PcrA7e-0963.2
NC_011274:4577402:4588873458887345907141842Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type I restriction enzyme7e-0963.2
NC_011294:4604283:4615608461560846174491842Salmonella enterica subsp. enterica serovar Enteritidis strtype I restriction enzyme7e-0963.2
NC_011205:4761598:4772922477292247747631842Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853DNA helicase II6e-0963.2
NC_007644:2099878:2099878209987821020672190Moorella thermoacetica ATCC 39073, complete genomeATP-dependent DNA helicase PcrA2e-0861.6
NC_017347:2017097:2027227202722720294192193Staphylococcus aureus subsp. aureus T0131 chromosome, completeATP-dependent DNA helicase, PcrA2e-0861.2
NC_017033:1525132:1533469153346915367803312Frateuria aurantia DSM 6220 chromosome, complete genomeDNA/RNA helicase3e-0861.2
NC_009975:1712577:1739721173972117425612841Methanococcus maripaludis C6, complete genomeUvrD/REP helicase3e-0861.2
NC_011898:3973627:3977028397702839793102283Clostridium cellulolyticum H10, complete genomesuperfamily I DNA helicase4e-0860.8
NC_015275:3407358:3444146344414634464312286Clostridium lentocellum DSM 5427 chromosome, complete genomeUvrD/REP helicase3e-0860.8
NC_018080:6048516:6099658609965861016672010Pseudomonas aeruginosa DK2 chromosome, complete genomeATP-dependent DNA helicase Rep4e-0860.5
NC_018868:2867500:2882650288265028846712022Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeATP-dependent DNA helicase Rep5e-0860.5
NC_014218:1437931:1439939143993914424492511Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeUvrD/REP helicase6e-0860.1
NC_014541:4167916:4183237418323741854022166Ferrimonas balearica DSM 9799 chromosome, complete genomeATP-dependent DNA helicase UvrD6e-0860.1
NC_014614:656000:6578816578816600432163Clostridium sticklandii, complete genomeATP-dependent DNA helicase5e-0860.1
NC_012811:317308:3394763394763414762001Methylobacterium extorquens AM1 megaplasmid, complete sequenceputative ATP-dependent DNA helicase7e-0859.7
NC_012724:2682154:2693828269382826966652838Burkholderia glumae BGR1 chromosome 1, complete genomeUvrD/REP helicase7e-0859.7
NC_007205:1:1382913829158652037Candidatus Pelagibacter ubique HTCC1062, complete genomeDNA helicase II9e-0859.3
NC_008752:2056547:2074331207433120767872457Acidovorax avenae subsp. citrulli AAC00-1, complete genomeUvrD/REP helicase1e-0758.9
NC_010278:1467146:1468739146873914709372199Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,DNA-dependent helicase II1e-0758.9
NC_008570:236500:2417872417872439582172Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeDNA helicase II1e-0758.9
NC_010545:619346:6399726399726430403069Corynebacterium urealyticum DSM 7109, complete genomeputative ATP-dependent DNA helicase II1e-0758.9
NC_007645:713930:7350657350657372302166Hahella chejuensis KCTC 2396, complete genomeSuperfamily I DNA and RNA helicase1e-0758.5
NC_011071:2770229:2778256277825627810092754Stenotrophomonas maltophilia R551-3, complete genomeUvrD/REP helicase1e-0758.5
NC_012560:5276000:5292043529204352949072865Azotobacter vinelandii DJ, complete genomeAnkyrin2e-0758.2
NC_021150:5234000:5249935524993552527992865Azotobacter vinelandii CA6, complete genomeAnkyrin2e-0758.2
NC_009484:857384:8840898840898860081920Acidiphilium cryptum JF-5 chromosome, complete genomeUvrD/REP helicase2e-0758.2
NC_013406:4023367:4037035403703540394612427Paenibacillus sp. Y412MC10 chromosome, complete genomeUvrD/Rep family helicase3e-0757.8
NC_017080:1981788:1981788198178819841962409Phycisphaera mikurensis NBRC 102666, complete genomeATP-dependent DNA helicase PcrA3e-0757.8
NC_014924:3065430:3065430306543030676102181Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeDNA helicase II3e-0757.8
NC_020829:5382500:5399636539963654016452010Pseudomonas denitrificans ATCC 13867, complete genomeATP-dependent DNA helicase Rep4e-0757.4
NC_014393:3425694:3425694342569434276401947Clostridium cellulovorans 743B chromosome, complete genomePeptidase S24/S26A/S26B, conserved region7e-0756.6
NC_010943:3069082:3072776307277630755352760Stenotrophomonas maltophilia K279a, complete genomeputative helicase IV9e-0756.2
NC_014221:38000:4901149011523313321Truepera radiovictrix DSM 17093 chromosome, complete genomeUvrD/REP helicase8e-0756.2
NC_012668:442601:4725634725634745782016Vibrio cholerae MJ-1236 chromosome 1, complete sequenceATP-dependent DNA helicase Rep8e-0756.2
NC_003919:5056650:5056650505665050586261977Xanthomonas axonopodis pv. citri str. 306, complete genomeATP-dependent DNA helicase8e-0756.2
NC_015573:1671000:1688552168855216907562205Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeATP-dependent DNA helicase PcrA7e-0756.2
NC_017068:1401352:1436468143646814381351668Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein9e-0755.8
NC_003919:2639080:2648746264874626515652820Xanthomonas axonopodis pv. citri str. 306, complete genomehelicase IV2e-0655.5
NC_017093:7234589:7240800724080072424881689Actinoplanes missouriensis 431, complete genomehypothetical protein1e-0655.5
NC_019978:2293327:2307011230701123091222112Halobacteroides halobius DSM 5150, complete genomeATP-dependent DNA helicase PcrA1e-0655.5
NC_014363:1680578:1680578168057816832172640Olsenella uli DSM 7084 chromosome, complete genomeUvrD/REP helicase2e-0655.1
NC_006155:172313:1935641935641955852022Yersinia pseudotuberculosis IP 32953, complete genomeATP-dependent DNA helicase Rep3e-0654.3
NC_010634:166900:1881581881581901792022Yersinia pseudotuberculosis PB1/+, complete genomeATP-dependent DNA helicase Rep4e-0653.9
NC_009483:2136424:2144486214448621463481863Geobacter uraniireducens Rf4 chromosome, complete genomeUvrD/REP helicase4e-0653.9
NC_011832:619874:6202246202246232833060Candidatus Methanosphaerula palustris E1-9c, complete genomeUvrD/REP helicase4e-0653.9
NC_007347:3612918:3635779363577936378932115Ralstonia eutropha JMP134 chromosome 1, complete sequenceUvrD/REP helicase6e-0653.5