Pre_GI: BLASTP Hits

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Query: NC_004603:1115134:1121252 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1121252, End: 1122388, Length: 1137

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005139:2201820:220810922081092208456348Vibrio vulnificus YJ016 chromosome I, complete sequencehypothetical protein2e-34146
NC_015410:2258800:2276000227600022773761377Pseudomonas mendocina NK-01 chromosome, complete genomeintegrase family protein3e-1996.3
NC_003198:3042000:3058163305816330598091647Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible integrase3e-1996.3
NC_016832:3020000:3032325303232530339441620Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Site-specific recombinase, phage integrase3e-1996.3
NC_004631:3030580:3043685304368530451481464Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein5e-1995.9
NC_013361:3867558:3901815390181539034221608Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase1e-1894.7
NC_011283:785973:7925257925257941651641Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase2e-1893.6
NC_014973:3452100:3471071347107134723601290Geobacter sp. M18 chromosome, complete genomeintegrase family protein4e-1892.8
NC_014541:1231021:1236294123629412375351242Ferrimonas balearica DSM 9799 chromosome, complete genomeintegrase family protein5e-1892.4
NC_010501:3987615:3992949399294939942741326Pseudomonas putida W619, complete genomeintegrase family protein6e-1892
NC_013353:3474077:3504839350483935064641626Escherichia coli O103:H2 str. 12009, complete genomeintegrase1e-1790.9
AP010958:3474077:3504839350483935064641626Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative integrase1e-1790.9
NC_008027:1847040:1862344186234418636361293Pseudomonas entomophila L48, complete genomeintegrase5e-1789
NC_015740:2614317:263366526336652634567903Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein2e-1687
NC_003911:1265972:1277271127727112788601590Silicibacter pomeroyi DSS-3, complete genomesite-specific recombinase, phage integrase family7e-1685.1
NC_009952:2217877:2223872222387222254611590Dinoroseobacter shibae DFL 12, complete genomeputative integrase7e-1685.1
NC_008782:1863853:1871054187105418726701617Acidovorax sp. JS42, complete genomephage integrase family protein6e-1582
NC_013716:5201097:5207462520746252091021641Citrobacter rodentium ICC168, complete genomeputative integrase2e-1480.9
NC_012918:1697860:1704183170418317054751293Geobacter sp. M21 chromosome, complete genomeintegrase family protein2e-1480.5
NC_010688:1192410:1196622119662211981871566Xanthomonas campestris pv. campestris, complete genomephage-related integrase4e-1479.3
NC_012968:239476:2397482397482412021455Methylotenera mobilis JLW8, complete genomehypothetical protein7e-1478.6
NC_009800:4529504:4532707453270745346561950Escherichia coli HS, complete genomesite-specific recombinase, phage integrase family1e-1377.4
NC_015567:1127780:1135692113569211367711080Serratia sp. AS9 chromosome, complete genomeintegrase family protein6e-1375.5
NC_015566:1127595:1135507113550711365861080Serratia sp. AS12 chromosome, complete genomeintegrase family protein6e-1375.5
NC_015422:3366500:3376628337662833779141287Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein7e-1375.1
NC_011146:1998981:2013194201319420144981305Geobacter bemidjiensis Bem, complete genomeintegrase family protein7e-1375.1
NC_013855:56344:6317763177653152139Azospirillum sp. B510 plasmid pAB510a, complete sequenceintegrase7e-1272
NC_012808:58701:6196261962637671806Methylobacterium extorquens AM1, complete genomehypothetical protein1e-1171.2
NC_011662:1160887:1170392117039211715971206Thauera sp. MZ1T, complete genomehypothetical protein2e-1170.1
NC_010688:1192410:1205404120540412068521449Xanthomonas campestris pv. campestris, complete genomephage-related integrase4e-1169.3
NC_014117:132524:1736441736441747381095Burkholderia sp. CCGE1002 chromosome chromosome 1, completeintegrase family protein5e-1169.3
NC_016585:116143:1196871196871216841998Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencehypothetical protein7e-1168.6
NC_014307:1619000:1623749162374916253741626Ralstonia solanacearum CFBP2957 chromosome, complete genomephage integrase9e-1168.2
NC_011757:4293000:4317113431711343185071395Methylobacterium chloromethanicum CM4, complete genomeintegrase family protein1e-1067.8
NC_003902:1858349:1882328188232818837761449Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related integrase1e-1067.8
NC_009434:608765:6764126764126776831272Pseudomonas stutzeri A1501, complete genomehypothetical protein1e-1067.8
NC_009348:2034500:2041208204120820424731266Aeromonas salmonicida subsp. salmonicida A449, complete genomephage integrase family site specific recombinase2e-1067
NC_014153:2044500:2065464206546420667681305Thiomonas intermedia K12 chromosome, complete genomeintegrase family protein3e-1066.6
NC_011146:3426500:3474592347459234759021311Geobacter bemidjiensis Bem, complete genomeintegrase family protein4e-1066.2
NC_007643:791500:7959047959047970641161Rhodospirillum rubrum ATCC 11170, complete genomePhage integrase4e-1066.2
NC_012796:2041579:2048611204861120503621752Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase3e-1066.2
NC_007086:2887875:2931121293112129322631143Xanthomonas campestris pv. campestris str. 8004, complete genomephage-related integrase4e-1065.9
NC_016010:1169850:1185584118558411871041521Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeIntegrase XerC9e-1065.1
NC_015573:1573621:1574928157492815760401113Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeintegrase family protein9e-1065.1
NC_007519:1782067:1787842178784217896921851Desulfovibrio alaskensis G20 chromosome, complete genomehypothetical protein1e-0964.7
NC_010511:7024412:7031164703116470326931530Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein1e-0964.3
NC_016803:593484:5983485983486000871740Desulfovibrio desulfuricans ND132 chromosome, complete genomeintegrase family protein2e-0963.9
NC_007508:1221500:1255730125573012572471518Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative integrase2e-0963.9
NC_012796:2683711:2690065269006526917561692Desulfovibrio magneticus RS-1, complete genomeputative site-specific recombinase2e-0963.5
NC_015733:4130000:4140692414069241419091218Pseudomonas putida S16 chromosome, complete genomeintegrase family protein2e-0963.5
NC_007946:289425:2952282952282971681941Escherichia coli UTI89, complete genomeputative integrase3e-0963.2
NC_002939:1866651:1874575187457518762451671Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu5, integrase3e-0963.2
NC_013421:3752619:3762474376247437644141941Pectobacterium wasabiae WPP163, complete genomeintegrase family protein3e-0963.2
NC_014973:1941500:1955814195581419571001287Geobacter sp. M18 chromosome, complete genomeintegrase family protein4e-0962.8
NC_004603:2235142:2240007224000722413441338Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein4e-0962.8
NC_003902:1858349:1865420186542018668141395Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related integrase6e-0962.4
NC_003919:1716831:1730204173020417315381335Xanthomonas axonopodis pv. citri str. 306, complete genomeintegrase6e-0962
NC_014355:139324:1433791433791448211443Candidatus Nitrospira defluvii, complete genomeputative integrase6e-0962
NC_011365:1969198:1993000199300019945951596Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeintegrase family protein8e-0961.6
NC_009434:3611738:3621234362123436224931260Pseudomonas stutzeri A1501, complete genomehypothetical protein2e-0860.8
NC_009850:1862602:1876559187655918780941536Arcobacter butzleri RM4018, complete genomehypothetical protein2e-0860.5
NC_014650:2969866:2985102298510229862921191Geobacillus sp. Y4.1MC1 chromosome, complete genomeintegrase2e-0860.5
NC_016010:1822212:1855472185547218566231152Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeintegrase2e-0860.5
NC_011000:3362382:3368967336896733707271761Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative integrase3e-0860.1
NC_015740:3631326:3631326363132636323571032Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein3e-0859.7
NC_013173:953633:9706779706779727402064Desulfomicrobium baculatum DSM 4028, complete genomeintegrase family protein4e-0859.3
NC_016010:1822212:1827666182766618291471482Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeintegrase5e-0859.3
NC_010524:1005355:1017147101714710183131167Leptothrix cholodnii SP-6, complete genomeintegrase family protein6e-0858.9
NC_010610:269380:2925302925302936331104Lactobacillus fermentum IFO 3956, complete genomeintegrase6e-0858.9
NC_014844:2828370:2841263284126328429511689Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehypothetical protein6e-0858.9
NC_010610:1178430:1200098120009812012011104Lactobacillus fermentum IFO 3956, complete genomeintegrase9e-0858.5
NC_010688:3030873:3061417306141730628171401Xanthomonas campestris pv. campestris, complete genomephage-related integrase8e-0858.5
NC_013854:1686997:1697457169745716991721716Azospirillum sp. B510, complete genomephage integrase family protein9e-0858.2
NC_014117:132524:1345211345211360951575Burkholderia sp. CCGE1002 chromosome chromosome 1, completehypothetical protein9e-0858.2
NC_014554:1821320:1838281183828118394441164Lactobacillus plantarum subsp. plantarum ST-III chromosome,prophage Lp2 protein 2, integrase1e-0757.8
NC_003919:1716831:1744033174403317455651533Xanthomonas axonopodis pv. citri str. 306, complete genomephage-related integrase1e-0757.8
NC_013456:2528284:2536921253692125386211701Vibrio sp. Ex25 chromosome 1, complete genomeintegrase2e-0757
NC_016010:1169850:1180972118097211820451074Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeIntegrase XerC3e-0756.6
NC_010511:915313:9290119290119306001590Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein3e-0756.6
NC_010084:2674972:2682560268256026845151956Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase family protein3e-0756.6
NC_010804:831000:8402588402588422131956Burkholderia multivorans ATCC 17616 chromosome 1, completetyrosine recombinase3e-0756.6
NC_014657:1775929:178774917877491788348600Caldicellulosiruptor owensensis OL chromosome, complete genome3e-0756.2
NC_008228:816000:8211628211628230211860Pseudoalteromonas atlantica T6c, complete genomephage integrase5e-0755.8
NC_011663:2813033:2823925282392528257331809Shewanella baltica OS223 chromosome, complete genomeintegrase family protein5e-0755.8
NC_014964:2272413:2294058229405822951761119Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeintegrase family protein7e-0755.5
NC_014624:1010193:1013752101375210149901239Eubacterium limosum KIST612 chromosome, complete genomeintegrase8e-0755.1
NC_010688:3229820:3237928323792832394601533Xanthomonas campestris pv. campestris, complete genomephage-related integrase1e-0654.7
NC_012856:3000839:3011439301143930124941056Ralstonia pickettii 12D chromosome 1, complete genomeintegrase family protein1e-0654.3
NC_010682:460523:4676864676864692871602Ralstonia pickettii 12J chromosome 1, complete sequencephage integrase1e-0654.3
NC_011757:4293000:4318726431872643204951770Methylobacterium chloromethanicum CM4, complete genomeintegrase family protein2e-0653.9
NC_007643:3799425:3824154382415438258541701Rhodospirillum rubrum ATCC 11170, complete genomePhage integrase2e-0653.5
NC_010501:4989455:5006142500614250075631422Pseudomonas putida W619, complete genomeintegrase family protein3e-0653.5
NC_015458:2338437:2340983234098323420711089Pusillimonas sp. T7-7 chromosome, complete genomesite-specific recombinase, phage integrase family5e-0652.8
NC_010804:2808676:2815315281531528166851371Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase / tyrosine recombinase5e-0652.4
NC_009256:3056000:3062577306257730639471371Burkholderia vietnamiensis G4 chromosome 1, complete sequencephage integrase family protein5e-0652.4
NC_010084:695817:7080887080887094581371Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase family protein5e-0652.4
NC_011000:1023800:1035090103509010364601371Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative phage-related integrase5e-0652.4
NC_020908:2788852:2797829279782927990701242Octadecabacter arcticus 238, complete genomeputative integrase8e-0651.6
NC_014335:2274774:229993922999392300787849Bacillus cereus biovar anthracis str. CI chromosome, completeDNA integration/recombination/invertion protein8e-0651.6
NC_020908:4263552:426684742668474267752906Octadecabacter arcticus 238, complete genomeintegrase/recombinase9e-0651.6