Pre_GI: BLASTP Hits

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Query: NC_004578:3817330:3839330 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3839330, End: 3841399, Length: 2070

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014307:1765230:1782361178236117839381578Ralstonia solanacearum CFBP2957 chromosome, complete genometail fiber-like protein2e-72273
NC_020209:3262000:3286536328653632879751440Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-67258
NC_004578:4499143:4518980451898045214062427Pseudomonas syringae pv. tomato str. DC3000, complete genometail fiber protein H, putative8e-58225
NC_020181:5130513:5173329517332951748041476Enterobacter aerogenes EA1509E, complete genomePhage tail fiber protein5e-50199
NC_012779:3016327:3016327301632730174331107Edwardsiella ictaluri 93-146, complete genomehypothetical protein3e-47190
NC_014228:3022903:3035424303542430371931770Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein8e-47189
NC_014500:177824:1859891859891873441356Dickeya dadantii 3937 chromosome, complete genomeTail fiber protein2e-46187
NC_014837:3739408:3760769376076937622681500Pantoea sp. At-9b chromosome, complete genomephage-like tail fiber-like protein2e-46187
NC_014562:1698253:1720013172001317210591047Pantoea vagans C9-1 chromosome, complete genomeProbable tail fiber protein (GpH)2e-45184
NC_014500:177824:1916551916551930731419Dickeya dadantii 3937 chromosome, complete genomeTail fiber protein8e-45182
NC_014500:177824:1876761876761889681293Dickeya dadantii 3937 chromosome, complete genomeTail fiber protein2e-44181
NC_014500:177824:1893301893301907901461Dickeya dadantii 3937 chromosome, complete genomeTail fiber protein3e-44180
NC_020064:871338:8878098878098888491041Serratia marcescens FGI94, complete genomephage-related tail fiber protein5e-44179
NC_003198:4453457:4483135448313544847541620Salmonella enterica subsp. enterica serovar Typhi str. CT18,probable phage tail fibre protein2e-43177
NC_014306:103545:1299871299871311021116Erwinia billingiae Eb661, complete genomePhage Tail Collar domain protein4e-39163
NC_007963:1552761:1576923157692315784371515Chromohalobacter salexigens DSM 3043, complete genomePhage-related tail fibre protein-like protein5e-38159
NC_010658:1772994:1774417177441717761291713Shigella boydii CDC 3083-94, complete genomegpH2e-34148
NC_007613:1353500:1373323137332313754732151Shigella boydii Sb227, complete genomeputative bacteriophage tail protein4e-34147
NC_015061:1598920:1627889162788916304052517Rahnella sp. Y9602 chromosome, complete genometail fiber repeat 2 protein1e-33145
NC_012967:2105251:2105251210525121080132763Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein3e-33144
NC_020064:871338:8784948784948802451752Serratia marcescens FGI94, complete genomephage-related tail fiber protein8e-32139
NC_020291:795500:8416888416888448793192Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeputative tail fiber protein9e-29129
NC_009495:2479465:2479946247994624816311686Clostridium botulinum A str. ATCC 3502 chromosome, complete genometail fiber protein1e-27125
NC_012563:2566500:2568488256848825696541167Clostridium botulinum A2 str. Kyoto, complete genometail fiber protein1e-27125
NC_016845:4077293:4077293407729340783631071Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein2e-27124
NC_011837:1935294:193770919377091938497789Clostridium kluyveri NBRC 12016, complete genomehypothetical protein3e-26120
NC_009706:1935418:193783319378331938621789Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein3e-26120
NC_017297:2531750:2533204253320425343851182Clostridium botulinum F str. 230613 chromosome, complete genometail fiber protein H3e-26120
NC_010674:1986000:1990900199090019922911392Clostridium botulinum B str. Eklund 17B, complete genomeputative tail fiber protein1e-25119
NC_009648:3803622:3810023381002338110871065Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage tail fibre protein3e-24114
NC_009617:3926843:393812839381283938781654Clostridium beijerinckii NCIMB 8052 chromosome, complete genometail fiber-like protein2e-24114
NC_009706:2003194:2003194200319420069853792Clostridium kluyveri DSM 555 chromosome, complete genomephage tail fiber protein4e-24113
NC_010382:3643288:3645724364572436470581335Lysinibacillus sphaericus C3-41, complete genometail fiber protein (GpH)8e-24112
NC_015731:1578106:158030715803071580948642Nitrosomonas sp. Is79A3 chromosome, complete genometail fiber repeat 2 protein7e-23109
NC_013315:1707293:1721340172134017223651026Clostridium difficile CD196 chromosome, complete genomephage tail fiber protein2e-20101
NC_009850:1651410:1663807166380716649161110Arcobacter butzleri RM4018, complete genomehypothetical protein5e-20100
NC_012791:2622923:2630943263094326331802238Variovorax paradoxus S110 chromosome 1, complete genomehypothetical protein1e-1998.6
NC_008781:3508784:3508784350878435102351452Polaromonas naphthalenivorans CJ2, complete genomephage Tail Collar domain protein2e-1998.2
NC_011740:2737467:2755649275564927574301782Escherichia fergusonii ATCC 35469, complete genomePutative tail fiber protein (fragment)5e-1790.1
NC_010674:2817651:2825907282590728271391233Clostridium botulinum B str. Eklund 17B, complete genomephage tail fiber domain protein7e-1789.4
NC_012962:4942000:494591549459154946163249Photorhabdus asymbiotica, complete genomeprobable variable tail fibre protein3e-1687.8
NC_017192:1885457:1913423191342319149581536Arcobacter sp. L, complete genomephage tail fiber protein3e-1584.3
NC_012962:4942000:4944639494463949458861248Photorhabdus asymbiotica, complete genomeputative phage protein gph2e-1482
NC_009801:2159123:2180371218037121815191149Escherichia coli E24377A, complete genomehypothetical protein9e-1375.9
CP002797:1960000:1972755197275519739391185Escherichia coli NA114, complete genomehypothetical protein7e-1066.2
NC_010338:3743000:3779149377914937818482700Caulobacter sp. K31, complete genomehypothetical protein2e-0655.1
NC_009256:1365500:1373490137349013747131224Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein2e-0655.1