Pre_GI: BLASTP Hits

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Query: NC_004578:3193490:3218240 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3218240, End: 3219619, Length: 1380

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008702:2520500:2531423253142325377526330Azoarcus sp. BH72, complete genomeputative helicase related protein3e-105382
NC_018679:1738126:1769258176925817755606303Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completehypothetical protein8e-94344
NC_010162:11387949:1139139111391391113976906300Sorangium cellulosum 'So ce 56', complete genomehypothetical protein5e-90332
NC_016832:4649432:4665946466594646696953750Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein9e-88324
NC_004631:4687270:4689323468932346930723750Salmonella enterica subsp. enterica serovar Typhi Ty2, completehelicase related protein9e-88324
NC_003198:4676536:4706399470639947101483750Salmonella enterica subsp. enterica serovar Typhi str. CT18,helicase related protein9e-88324
NC_006511:4465495:4482333448233344886536321Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-87322
NC_011147:4460726:4477563447756344838836321Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-87322
NC_011753:1501868:1501868150186815081256258Vibrio splendidus LGP32 chromosome 1, complete genomehypothetical protein3e-87322
NC_020260:3355814:3368923336892333730654143Cronobacter sakazakii Sp291, complete genomeputative DEAD-box helicase-like protein3e-86319
NC_013421:1819036:1819036181903618253506315Pectobacterium wasabiae WPP163, complete genomeDEAD/DEAH box helicase domain protein2e-83310
NC_008577:2402165:2440874244087424472366363Shewanella sp. ANA-3 chromosome 1, complete sequenceDEAD/DEAH box helicase domain protein8e-76284
NC_012587:2298324:2301572230157223077006129Rhizobium sp. NGR234, complete genomeATP-dependent helicase3e-75283
NC_010468:4252940:4256022425602242623366315Escherichia coli ATCC 8739, complete genomeHelicase superfamily 1 and 2 ATP-binding2e-69263
NC_010498:4899167:4916328491632849226426315Escherichia coli SMS-3-5, complete genomeDEAD/DEAH box helicase domain-containing protein4e-69262
NC_013941:5192500:5205508520550852118226315Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-68260
NC_002695:5352554:5367243536724353735576315Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-68260
NC_002655:5382557:5397246539724654035606315Escherichia coli O157:H7 EDL933, complete genomehypothetical protein1e-68260
NC_013008:5382917:5396952539695254032666315Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-68260
NC_011353:5426793:5440891544089154472056315Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDEAD/DEAH box helicase2e-68260
NC_015580:1584078:1587364158736415933215958Novosphingobium sp. PP1Y, complete genomehypothetical protein4e-68259
NC_020126:5608880:5631162563116256374736312Myxococcus stipitatus DSM 14675, complete genomeDEAD/DEAH box helicase2e-37157
NC_015711:6149615:6159753615975361660556303Myxococcus fulvus HW-1 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein2e-33144
NC_021184:3793285:3815341381534138198614521Desulfotomaculum gibsoniae DSM 7213, complete genomehelicase family protein with metal-binding cysteine cluster6e-28125
NC_007645:5160133:5167630516763051733055676Hahella chejuensis KCTC 2396, complete genomeDistinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster1e-27124
NC_018524:4235773:4231082423108242357764695Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehelicase conserved C-terminal domain protein5e-27122
NC_008596:1302000:1337844133784413428475004Mycobacterium smegmatis str. MC2 155, complete genomeDEAD/DEAH box helicase5e-27122
NC_014318:9120651:9142520914252091472234704Amycolatopsis mediterranei U32 chromosome, complete genomeDEAD/DEAH box helicase5e-27122
NC_017186:9120711:9142580914258091472834704Amycolatopsis mediterranei S699 chromosome, complete genomeDEAD/DEAH box helicase5e-27122
NC_006958:748500:7503567503567551584803Corynebacterium glutamicum ATCC 13032, complete genomehelicase5e-27122
NC_003450:747000:7488837488837536854803Corynebacterium glutamicum ATCC 13032, complete genomehelicase family protein5e-27122
NC_008146:861319:8772058772058818364632Mycobacterium sp. MCS, complete genomeDEAD/DEAH box helicase-like protein4e-26119
NC_008705:868623:8845098845098891404632Mycobacterium sp. KMS, complete genomeDEAD/DEAH box helicase domain protein4e-26119
NC_012108:1664341:1672239167223916781245886Desulfobacterium autotrophicum HRM2, complete genomeDbp2e-25117
NC_014253:1163783:1179775117977511845984824Methanohalobium evestigatum Z-7303 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein1e-25117
NC_013530:2492312:2506155250615525107324578Xylanimonas cellulosilytica DSM 15894, complete genomeDEAD/DEAH box helicase domain protein5e-25115
NC_010482:701000:7105017105017153334833Candidatus Korarchaeum cryptofilum OPF8, complete genomeDEAD/DEAH box helicase domain protein9e-25115
NC_008346:584305:5998335998336045694737Syntrophomonas wolfei subsp. wolfei str. Goettingen, completehelicase9e-24111
NC_014659:1731121:1753652175365217585834932Rhodococcus equi 103S, complete genomeDEAD/DEAH box helicase2e-23110
NC_014410:937599:9471529471529519814830Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Protein of unknown function DUF19984e-22106
AC_000091:4569379:4578815457881545815352721Escherichia coli W3110 DNA, complete genome8e-22105
NC_015565:2508345:2512250251225025171034854Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completehypothetical protein5e-21102
NC_013216:3473119:3492468349246834976935226Desulfotomaculum acetoxidans DSM 771, complete genomeDEAD/DEAH box helicase domain protein4e-2099.4
NC_008697:55406:8009980099853245226Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceDEAD/DEAH box helicase domain protein1e-1998.2
NC_019897:2908971:2918005291800529232125208Thermobacillus composti KWC4 chromosome, complete genomehelicase family protein with metal-binding cysteine cluster2e-1997.4
NC_007645:3934239:3934239393423939394765238Hahella chejuensis KCTC 2396, complete genomeDistinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster4e-1996.7
NC_011830:693555:6961506961507013725223Desulfitobacterium hafniense DCB-2, complete genomeDEAD/DEAH box helicase domain protein4e-1996.3
NC_013406:1217385:1230830123083012361095280Paenibacillus sp. Y412MC10 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein8e-1995.5
NC_013411:284461:3023593023593077225364Geobacillus sp. Y412MC61, complete genomeDEAD/DEAH box helicase domain protein4e-1893.2
NC_014915:2427000:2431766243176624371295364Geobacillus sp. Y412MC52 chromosome, complete genomeProtein of unknown function DUF19984e-1893.2
NC_013941:5219841:5219841521984152261826342Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDEAD/DEAH box helicase4e-1789.7
NC_013941:5192500:5219841521984152261826342Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDEAD/DEAH box helicase4e-1789.7
NC_010498:4930649:4930649493064949369906342Escherichia coli SMS-3-5, complete genomeDEAD/DEAH box helicase domain-containing protein6e-1789
NC_014151:3611956:3658078365807836632825205Cellulomonas flavigena DSM 20109 chromosome, complete genomeDEAD/DEAH box helicase domain protein1e-1688.2
NC_013526:835117:8531508531508582465097Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeDEAD/DEAH box helicase domain protein1e-1688.2
NC_002695:5381576:5381576538157653879176342Escherichia coli O157:H7 str. Sakai, complete genomeputative RNA helicase1e-1688.2
NC_011353:5426793:5455224545522454615656342Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDEAD/DEAH box helicase1e-1688.2
NC_011353:5455224:5455224545522454615656342Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDEAD/DEAH box helicase1e-1688.2
NC_013008:5382917:5411285541128554176266342Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehelicase1e-1688.2
NC_013008:5411285:5411285541128554176266342Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehelicase1e-1688.2
NC_005125:2887319:2894349289434929000125664Gloeobacter violaceus PCC 7421, complete genomehypothetical protein2e-1687.8
NC_007426:1840670:1875459187545918807625304Natronomonas pharaonis DSM 2160, complete genomepredicted helicase3e-1687
NC_015510:3543352:3558041355804135632365196Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein6e-1685.9
NC_013595:8603188:8633748863374886389195172Streptosporangium roseum DSM 43021, complete genomeDEAD/DEAH box helicase domain protein6e-1685.9
NC_013158:1686239:1712412171241217177065295Halorhabdus utahensis DSM 12940, complete genomeDEAD/DEAH box helicase domain protein9e-1685.1
NC_008435:2368000:2396355239635524025256171Rhodopseudomonas palustris BisA53, complete genomeDEAD/DEAH box helicase domain protein5e-1582.8
NC_008212:2591750:2611501261150126167925292Haloquadratum walsbyi DSM 16790, complete genomepredicted helicase5e-1582.8
NC_010554:2646806:2707018270701827134406423Proteus mirabilis HI4320, complete genomeDNA helicase8e-1582
NC_013929:1799594:1799594179959418059476354Streptomyces scabiei 87.22 chromosome, complete genomeserine/threonine-protein kinase1e-1481.3
NC_010622:249625:2726432726432789366294Burkholderia phymatum STM815 chromosome 1, complete sequenceHelicase superfamily 1 and 2 ATP-binding4e-1479.7
NC_012811:1105395:1100140110014011053985259Methylobacterium extorquens AM1 megaplasmid, complete sequenceDEAD/DEAH box helicase domain protein5e-1479.3
NC_010172:280092:3025143025143077785265Methylobacterium extorquens PA1, complete genomeDEAD/DEAH box helicase domain protein6e-1479
NC_008346:331820:3563113563113619475637Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeputative helicase5e-1376.3
NC_006677:1596560:1646189164618916513545166Gluconobacter oxydans 621H, complete genomeProbable ATP-dependent helicase Lhr6e-1375.9
NC_015711:3122000:3138789313878931440985310Myxococcus fulvus HW-1 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein8e-1375.5
NC_012912:1670784:1679797167979716856435847Dickeya zeae Ech1591, complete genomeDEAD/DEAH box helicase domain protein2e-1274.3
NC_009434:3611738:3714917371491737212496333Pseudomonas stutzeri A1501, complete genomeputative helicase2e-1274.3
NC_015942:355944:3786453786453839395295Acidithiobacillus ferrivorans SS3 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein4e-1273.2
NC_015573:2323268:2330178233017823352565079Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein6e-1272.4
NC_013235:2129982:2166843216684321721855343Nakamurella multipartita DSM 44233, complete genomehelicase domain protein8e-1272
NC_013216:1442044:1454991145499114614016411Desulfotomaculum acetoxidans DSM 771, complete genomeDEAD/DEAH box helicase domain protein8e-1272
NC_016114:1474000:1506620150662015122085589Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeDEAD/DEAH box helicase1e-1171.6
NC_019968:1147409:1165836116583611710165181Prevotella dentalis DSM 3688 chromosome 2, complete sequencehelicase family protein with metal-binding cysteine cluster1e-1171.6
NC_013441:382597:3901333901333963966264Gordonia bronchialis DSM 43247, complete genomeProtein of unknown function DUF19981e-1171.2
NC_008686:1472899:1492584149258414977615178Paracoccus denitrificans PD1222 chromosome 1, complete sequenceDEAD/DEAH box helicase domain protein3e-1170.1
NC_012856:2815797:2822604282260428279165313Ralstonia pickettii 12D chromosome 1, complete genomeDEAD/DEAH box helicase domain protein4e-1169.7
NC_003047:3419212:3419212341921234247105499Sinorhizobium meliloti 1021, complete genomehypothetical protein1e-1068.2
NC_015434:3755560:3755560375556037619856426Verrucosispora maris AB-18-032 chromosome, complete genomeRNA helicase2e-1067.4
NC_015957:2755709:2755709275570927624676759Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein1e-0964.7
NC_017093:6461486:6461486646148664679176432Actinoplanes missouriensis 431, complete genomeputative DEAD/DEAH box helicase1e-0964.7
NC_015520:224136:2254852254852269901506Mahella australiensis 50-1 BON chromosome, complete genome1e-0964.7
NC_008782:867344:8750158750158803125298Acidovorax sp. JS42, complete genomeDEAD/DEAH box helicase domain protein2e-0964.3
NC_018679:1738126:1749993174999317564366444Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeDNA helicase2e-0963.9
NC_017278:48630:6871068710742565547Thermus sp. CCB_US3_UF1 chromosome, complete genomehypothetical protein5e-0962.8
NC_015167:2663686:2678734267873426850396306Cellulophaga lytica DSM 7489 chromosome, complete genomehypothetical protein2e-0861.2
NC_010831:931961:9568719568719606443774Chlorobium phaeobacteroides BS1, complete genome2e-0861.2
NC_008639:1462000:1487371148737114925305160Chlorobium phaeobacteroides DSM 266, complete genomeDEAD/DEAH box helicase domain protein4e-0859.7
NC_006513:148950:1698831698831736233741Azoarcus sp. EbN1, complete genomehelicase (putative RNA helicase), fragment8e-0858.9
NC_015576:612164:6349896349896367101722Mycobacterium sp. JDM601 chromosome, complete genomeDEAD/DEAH protein1e-0758.2
NC_004129:3452885:3473854347385434797005847Pseudomonas fluorescens Pf-5, complete genomehelicase2e-0757.4
NC_008278:6854759:6870838687083868772726435Frankia alni ACN14a, complete genomePutative helicase5e-0756.2
NC_013929:2375613:2424894242489424316166723Streptomyces scabiei 87.22 chromosome, complete genomeRNA helicase7e-0755.8
NC_016111:1484424:1491920149192014986456726Streptomyces cattleya NRRL 8057, complete genomehelicase7e-0652.4
NC_015576:612164:6263136263136325856273Mycobacterium sp. JDM601 chromosome, complete genomehelicase superfamily protein9e-0652