Pre_GI: BLASTP Hits

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Query: NC_004578:20738:33978 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 33978, End: 35933, Length: 1956

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:4768500:4789528478952847914591932Pseudomonas poae RE*1-1-14, complete genometransposase3e-54213
NC_020829:1:2726827268292021935Pseudomonas denitrificans ATCC 13867, complete genometransposase1e-46188
NC_015942:2544407:2566316256631625683522037Acidithiobacillus ferrivorans SS3 chromosome, complete genomeintegrase catalytic subunit2e-28127
NC_014539:1:1839118391203521962Burkholderia sp. CCGE1003 chromosome 1, complete sequenceintegrase catalytic subunit5e-26119
NC_010322:1:88288828107861959Pseudomonas putida GB-1 chromosome, complete genomeintegrase catalytic subunit3e-23110
NC_009512:1:80468046100041959Pseudomonas putida F1, complete genomeIntegrase, catalytic region3e-23110
NC_010501:1:80668066100241959Pseudomonas putida W619, complete genomeIntegrase catalytic region3e-23110
NC_002947:8394:1713317133191662034Pseudomonas putida KT2440, complete genometransposase, putative3e-23110
NC_015572:1:1358813588155761989Methylomonas methanica MC09 chromosome, complete genomeintegrase catalytic subunit6e-23109
NC_011662:1:2182621826238141989Thauera sp. MZ1T, complete genomehypothetical protein5e-23109
NC_014366:3555425:3567950356795035698481899Gamma proteobacterium HdN1, complete genomeIntegrase, catalytic region1e-22108
NC_008577:4611431:4638394463839446402471854Shewanella sp. ANA-3 chromosome 1, complete sequenceIntegrase, catalytic region6e-22106
NC_009659:3384997:3399629339962934014611833Janthinobacterium sp. Marseille chromosome, complete genometransposase6e-22106
NC_015572:1:4276342763446431881Methylomonas methanica MC09 chromosome, complete genomeintegrase catalytic subunit1e-20102
NC_010002:1879220:1892059189205918940111953Delftia acidovorans SPH-1, complete genomehypothetical protein8e-2099.4
NC_019973:6102442:6121481612148161237392259Mesorhizobium australicum WSM2073, complete genomeintegrase family protein2e-1997.8
NC_007520:407627:4259384259384278481911Thiomicrospira crunogena XCL-2, complete genomeIntegrase, catalytic region2e-1997.8
NC_007509:3668:2569725697276461950Burkholderia sp. 383 chromosome 3, complete sequencehypothetical protein1e-1895.9
NC_014307:2760347:2768927276892727708971971Ralstonia solanacearum CFBP2957 chromosome, complete genomehypothetical protein8e-1892.8
NC_007575:1663088:1667067166706716689231857Sulfurimonas denitrificans DSM 1251, complete genomeintegrase catalytic subunit2e-1791.3
NC_007912:231817:2359352359352377701836Saccharophagus degradans 2-40, complete genomeUrease, beta subunit4e-1790.5
NC_017387:247462:2474622474622493721911Acinetobacter baumannii TCDC-AB0715 chromosome, complete genometransposition protein B1e-1688.6
NC_012440:1215838:1236077123607712379361860Persephonella marina EX-H1, complete genomeTniA transposase3e-1687.4
NC_017162:270460:2739922739922759021911Acinetobacter baumannii 1656-2 chromosome, complete genometransposase4e-1687
NC_012968:63898:7520175201771921992Methylotenera mobilis JLW8, complete genomeIntegrase catalytic region5e-1686.7
NC_007413:1405817:1407584140758414092661683Anabaena variabilis ATCC 29413, complete genomeIntegrase, catalytic region7e-1686.3
NC_010410:3606826:3693499369349936954091911Acinetobacter baumannii AYE, complete genomeputative transposase7e-1686.3
NC_016616:915755:9399229399229418231902Dechlorosoma suillum PS chromosome, complete genomeintegrase family protein8e-1686.3
NC_015161:1748236:1755388175538817573311944Deinococcus proteolyticus MRP chromosome, complete genomehypothetical protein2e-1584.7
NC_017986:1885613:1888422188842218901011680Pseudomonas putida ND6 chromosome, complete genomeTniA6e-1583.2
NC_010501:2511887:2524038252403825259181881Pseudomonas putida W619, complete genomeIntegrase catalytic region2e-1481.6
NC_016616:2644883:2650240265024026519221683Dechlorosoma suillum PS chromosome, complete genomeMu transposase/integrase2e-1481.6
NC_019673:6394319:6402870640287064042431374Saccharothrix espanaensis DSM 44229 complete genomeputative integrase2e-1481.3
NC_012855:39751:6146561465634772013Ralstonia pickettii 12D plasmid pRp12D01, complete sequenceIntegrase catalytic region4e-1480.1
NC_011761:2217632:2229241222924122311211881Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completetransposon transposition protein B6e-1479.7
NC_002678:5060670:5088718508871850903251608Mesorhizobium loti MAFF303099, complete genometransposase9e-1479.3
NC_008782:1277117:1296668129666812983381671Acidovorax sp. JS42, complete genomeIntegrase, catalytic region1e-1378.6
NC_006932:727943:7342567342567363702115Brucella abortus biovar 1 str. 9-941 chromosome I, completetransposase, hypothetical2e-1377.8
NC_007618:724238:7305517305517326652115Brucella melitensis biovar Abortus 2308 chromosome I, completeIntegrase, catalytic domain2e-1377.8
NC_020409:2222000:2225628222562822275471920Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeIntegrase catalytic region2e-1377.8
NC_010103:704875:7112707112707130061737Brucella canis ATCC 23365 chromosome I, complete sequenceIntegrase, catalytic domain3e-1377.8
NC_017246:727143:7334897334897356032115Brucella melitensis M5-90 chromosome chromosome I, completeintegrase, catalytic domain -containing protein3e-1377.8
NC_017244:726893:7332397332397353532115Brucella melitensis M28 chromosome chromosome 1, complete sequenceintegrase catalytic domain-containing protein3e-1377.8
NC_015857:731982:7393107393107414242115Brucella pinnipedialis B2/94 chromosome chromosome 1, completeintegrase catalytic subunit2e-1377.8
NC_004310:706238:7125517125517146652115Brucella suis 1330 chromosome I, complete sequencetransposase, putative2e-1377.8
NC_010742:726146:7325737325737346872115Brucella abortus S19 chromosome 1, complete sequenceIntegrase, catalytic domain protein2e-1377.8
NC_013119:707804:7158337158337179472115Brucella microti CCM 4915 chromosome 1, complete sequencetransposase, putative2e-1377.8
NC_016778:329288:3403393403393424532115Brucella canis HSK A52141 chromosome 1, complete sequencetransposase2e-1377.8
NC_016795:1673464:1681716168171616838302115Brucella abortus A13334 chromosome 1, complete sequencetransposase2e-1377.8
NC_016797:706980:7124827124827145962115Brucella suis VBI22 chromosome I, complete sequencetransposase2e-1377.8
NC_017251:707000:7125377125377146512115Brucella suis 1330 chromosome I, complete genometransposase2e-1377.8
NC_010939:405477:4235454235454254731929Actinobacillus pleuropneumoniae serovar 7 str. AP76, completePutative transposase2e-1377.8
NC_012441:727500:7332317332317353452115Brucella melitensis ATCC 23457 chromosome I, complete sequenceintegrase catalytic domain-containing protein3e-1377.4
NC_017248:721764:7297577297577318712115Brucella melitensis NI chromosome chromosome I, complete sequenceIntegrase, catalytic domain protein3e-1377.4
NC_003317:1263562:1271799127179912737601962Brucella melitensis 16M chromosome I, complete sequenceTRANSPOSASE3e-1377.4
NC_010169:725152:7314657314657335792115Brucella suis ATCC 23445 chromosome I, complete sequenceIntegrase, catalytic domain3e-1377.4
NC_009838:81913:1099931099931121162124Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceTnsB7e-1376.3
CU928145:3983432:3998093399809340002162124Escherichia coli 55989 chromosome, complete genomeTn7-like transposition protein TnsB7e-1376.3
NC_011748:3983432:3998093399809340002162124Escherichia coli 55989, complete genomeTn7-like transposition protein TnsB7e-1376.3
NC_010515:2111691:2128434212843421301611728Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceIntegrase catalytic region1e-1275.9
NC_017986:5833819:5844511584451158462291719Pseudomonas putida ND6 chromosome, complete genomeintegrase catalytic subunit1e-1275.9
NC_007498:134442:1538771538771557541878Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein9e-1375.9
NC_008061:190287:2051762051762071641989Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceIntegrase, catalytic region9e-1375.9
NC_014121:5000069:5014584501458450166622079Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeTn7-like transposition protein TnsB1e-1275.5
NC_009656:3127240:3138806313880631406501845Pseudomonas aeruginosa PA7 chromosome, complete genomeintegrase catalytic subunit2e-1274.3
NC_014550:3377834:3423654342365434251621509Arthrobacter arilaitensis Re117, complete genome3e-1274.3
NC_016901:2594942:2614389261438926163231935Shewanella baltica OS678 chromosome, complete genomeintegrase catalytic subunit3e-1273.9
NC_009997:2635025:2654472265447226564061935Shewanella baltica OS195, complete genomeIntegrase catalytic region3e-1273.9
NC_012587:2326000:2339902233990223423252424Rhizobium sp. NGR234, complete genomehypothetical protein3e-1273.9
NC_012988:2507142:2508022250802225096801659Methylobacterium extorquens DM4, complete genometransposase of ISMdi29, ISNCY family1e-1172
NC_009348:1064664:1073012107301210748921881Aeromonas salmonicida subsp. salmonicida A449, complete genomeTniA transposase2e-1171.6
NC_016860:4055117:4082776408277640844551680Salmonella enterica subsp. enterica serovar Typhimurium strputative transposase TniA2e-1171.6
NC_009349:78000:8685886858885731716Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completeTniA protein2e-1171.6
NC_014924:1701952:1709896170989617112961401Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeIntegrase catalytic region2e-1171.6
NC_003384:157158:1693331693331706191287Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid2e-1171.6
NC_013365:92973:1039281039281051961269Escherichia coli O111:H- str. 11128 plasmid pO111_1, completeTniA protein2e-1171.2
NC_008543:90312:99641996411014401800Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceIntegrase, catalytic region4e-1170.5
NC_008061:2153495:2168333216833321701321800Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceIntegrase, catalytic region4e-1170.5
NC_009050:212270:2620552620552644032349Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceIntegrase, catalytic region4e-1170.5
NC_008209:761487:7708147708147729852172Roseobacter denitrificans OCh 114, complete genometransposase, putative3e-1170.5
NC_007517:3430237:3435106343510634370161911Geobacter metallireducens GS-15, complete genometransposase6e-1169.7
NC_012856:207194:2113422113422132341893Ralstonia pickettii 12D chromosome 1, complete genomeIntegrase catalytic region6e-1169.7
NC_009659:892272:9091379091379110831947Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein9e-1169.3
NC_012857:41946:4990849908526102703Ralstonia pickettii 12D chromosome 2, complete genomeIntegrase catalytic region9e-1169.3
NC_010678:900389:9083519083519110532703Ralstonia pickettii 12J chromosome 2, complete sequenceIntegrase catalytic region9e-1169.3
NC_009254:637952:6919556919556935831629Burkholderia vietnamiensis G4 chromosome 3, complete sequenceintegrase catalytic subunit2e-1068.6
NC_014215:2259290:2281505228150522832051701Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,TniA protein2e-1068.2
NC_009956:88354:9555895558970511494Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequenceintegrase catalytic region2e-1067.8
NC_015953:4045500:4052690405269040546932004Streptomyces sp. SirexAA-E chromosome, complete genomeintegrase catalytic subunit3e-1067.8
NC_009349:78000:817558175510125019496Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete4e-1067
NC_010682:3033646:3051516305151630534381923Ralstonia pickettii 12J chromosome 1, complete sequenceTniA transposase5e-1066.6
NC_010682:1763769:1768716176871617706381923Ralstonia pickettii 12J chromosome 1, complete sequenceTniA transposase5e-1066.6
NC_009050:212270:2669452669452692872343Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequencehypothetical protein5e-1066.6
NC_010682:1652636:1669589166958916715111923Ralstonia pickettii 12J chromosome 1, complete sequencehypothetical protein1e-0965.5
NC_013166:32474:3602436024378921869Kangiella koreensis DSM 16069, complete genomeTransposase-like Mu2e-0964.3
NC_015671:255808:2646962646962661051410Cellvibrio gilvus ATCC 13127 chromosome, complete genometransposase-like Mu3e-0964.3
NC_007492:6372900:6414895641489564170662172Pseudomonas fluorescens PfO-1, complete genomeTn7-like transposition protein B3e-0964.3
NC_010718:237962:2568042568042589572154Natranaerobius thermophilus JW/NM-WN-LF, complete genomeIntegrase catalytic region3e-0963.9
NC_013893:1723939:1725148172514817265901443Staphylococcus lugdunensis HKU09-01 chromosome, complete genomeTn552 transposase4e-0963.9
NC_012856:2633890:2649928264992826518261899Ralstonia pickettii 12D chromosome 1, complete genomeTniA transposase4e-0963.9
NC_011777:161505:1772771772771787221446Bacillus cereus AH820 plasmid pAH820_272, complete sequenceputative transposase5e-0963.5
NC_010086:1816378:1860062186006218627702709Burkholderia multivorans ATCC 17616 chromosome 2, completeIntegrase catalytic region9e-0962.8
NC_009255:1105786:1160917116091711636252709Burkholderia vietnamiensis G4 chromosome 2, complete sequenceintegrase catalytic subunit9e-0962.8
NC_010501:5735656:5750541575054157527122172Pseudomonas putida W619, complete genomeTn7-like transposition protein B9e-0962.8
NC_013441:5025444:5047476504747650497252250Gordonia bronchialis DSM 43247, complete genomeIntegrase catalytic region8e-0962.8
NC_013235:3913000:3930560393056039322241665Nakamurella multipartita DSM 44233, complete genomeIntegrase catalytic region1e-0862.4
NC_015733:5955467:5969934596993459721022169Pseudomonas putida S16 chromosome, complete genomeTn7-like transposition protein B1e-0862.4
NC_007974:2048000:2057521205752120596982178Ralstonia metallidurans CH34 chromosome 2, complete sequencehypothetical protein1e-0862
NC_012988:1459961:1514073151407315164422370Methylobacterium extorquens DM4, complete genomehypothetical protein2e-0861.6
NC_014394:1325616:1328977132897713311422166Gallionella capsiferriformans ES-2 chromosome, complete genomeIntegrase catalytic region2e-0861.6
NC_015497:4564339:4570940457094045731082169Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genometransposon Tn7 transposition protein TnsB2e-0861.6
NC_010634:4463727:4485390448539044875552166Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein3e-0860.8
NC_009339:149805:1538211538211559682148Mycobacterium gilvum PYR-GCK plasmid pMFLV01, complete sequenceintegrase catalytic subunit8e-0859.3
NC_006512:2789098:2812068281206828141462079Idiomarina loihiensis L2TR, complete genomeTransposon Tn7 transposition protein tnsB8e-0859.3
NC_015740:4508375:4518273451827345203332061Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeintegrase core domain-containing protein9e-0859.3
NC_014657:2127500:2136058213605821382202163Caldicellulosiruptor owensensis OL chromosome, complete genomeintegrase catalytic region2e-0758.5
NC_008686:405159:4264664264664285982133Paracoccus denitrificans PD1222 chromosome 1, complete sequenceIntegrase, catalytic region3e-0757.8
NC_015851:89006:1057801057801078552076Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposon Tn7 transposition protein tnsB4e-0757.4
NC_008435:2658986:2667838266783826700002163Rhodopseudomonas palustris BisA53, complete genomeIntegrase, catalytic region4e-0757.4
NC_009349:3396:1164611646138292184Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completeTn7-like transposition protein B5e-0756.6
NC_017075:1837966:1851199185119918539372739Rubrivivax gelatinosus IL144, complete genomeintegrase catalytic subunit8e-0756.2
NC_011206:200000:2065542065542087402187Acidithiobacillus ferrooxidans ATCC 53993, complete genomeTn7-like transposition protein B1e-0655.8
NC_016616:2112211:2131716213171621343702655Dechlorosoma suillum PS chromosome, complete genomeMu transposase/integrase1e-0655.5
NC_007759:512477:5284755284755307392265Syntrophus aciditrophicus SB, complete genometransposase2e-0654.7
NC_010625:1602191:1614741161474116169272187Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencehypothetical protein3e-0654.3