Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3819521 Shigella flexneri 2a str. 301, complete genome

Start: 3819521, End: 3820714, Length: 1194

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011751:3453683:3492377349237734935701194Escherichia coli UMN026 chromosome, complete genomeputative membrane transport protein, major facilitator superfamily0663
NC_004431:3409389:3469278346927834704711194Escherichia coli CFT073, complete genomeshiF protein0663
CP002797:4812799:4814659481465948158521194Escherichia coli NA114, complete genomePutative membrane transport protein0662
NC_011747:11532:1339213392145851194Escherichia coli S88 plasmid pECOS88, complete sequenceputative membrane transport protein ShiF2e-173608
NC_011745:4862218:486676848667684867505738Escherichia coli ED1a chromosome, complete genome1e-99363
NC_011745:4862218:487805348780534878553501Escherichia coli ED1a chromosome, complete genome6e-87321
NC_005810:3917254:3921844392184439230671224Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein8e-82304
NC_008150:317903:3207483207483219711224Yersinia pestis Antiqua, complete genomehypothetical protein8e-82304
NC_009381:588137:5900485900485912711224Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein8e-82304
NC_017160:905783:9076949076949089171224Yersinia pestis D182038 chromosome, complete genomehypothetical protein8e-82304
NC_017168:3286:7876787690991224Yersinia pestis A1122 chromosome, complete genomehypothetical protein8e-82304
NC_017265:809943:8118548118548130771224Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein8e-82304
NC_009708:874770:8766828766828779051224Yersinia pseudotuberculosis IP 31758 chromosome, complete genomemajor facilitator transporter4e-81301
NC_010465:893921:8958338958338970561224Yersinia pseudotuberculosis YPIII, complete genomemajor facilitator superfamily MFS_18e-81301
NC_014029:961522:9635449635449646561113Yersinia pestis Z176003 chromosome, complete genomehypothetical protein9e-78290
NC_017154:902739:9056959056959067021008Yersinia pestis D106004 chromosome, complete genomehypothetical protein4e-55215
NC_015387:2072237:2085508208550820867041197Marinithermus hydrothermalis DSM 14884 chromosome, complete genomemajor facilitator superfamily MFS_15e-1065.9