Pre_GI: BLASTP Hits

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Query: NC_004129:4333302:4339048 Pseudomonas fluorescens Pf-5, complete genome

Start: 4339048, End: 4339722, Length: 675

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:2234851:224301622430162243699684Pseudomonas fluorescens Pf-5, complete genomehypothetical protein6e-112403
NC_004129:2328491:234717123471712347848678Pseudomonas fluorescens Pf-5, complete genomehypothetical protein5e-109393
NC_012660:1737423:174641217464121747092681Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein2e-103374
NC_015379:4630367:465458546545854655277693Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein6e-98356
NC_017986:5421000:543207454320745432766693Pseudomonas putida ND6 chromosome, complete genomehypothetical protein1e-93342
NC_009512:3118907:312340531234053124070666Pseudomonas putida F1, complete genomeprotein of unknown function DUF1592e-93341
NC_016830:3869572:387633138763313876978648Pseudomonas fluorescens F113 chromosome, complete genomeGifsy-2 prophage protein3e-76284
NC_007005:1605000:161170016117001612392693Pseudomonas syringae pv. syringae B728a, complete genomeProtein of unknown function DUF1596e-53207
NC_010501:1868888:190458619045861905275690Pseudomonas putida W619, complete genomeprotein of unknown function DUF1592e-51202
NC_013850:1887556:193811419381141938785672Klebsiella variicola At-22 chromosome, complete genomeprotein of unknown function DUF1596e-47187
NC_011283:3177350:318464031846403185311672Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein2e-46185
NC_009434:3611738:363190536319053632618714Pseudomonas stutzeri A1501, complete genomehypothetical protein4e-46184
NC_014306:3524980:357754735775473578230684Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein5e-46184
NC_020181:929000:952043952043952720678Enterobacter aerogenes EA1509E, complete genomeGifsy-2 prophage protein4e-45181
NC_015761:1599000:160395516039551604626672Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-44179
NC_009778:1222273:124345212434521244135684Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-44177
NC_021066:2197490:220339622033962204067672Raoultella ornithinolytica B6, complete genomehypothetical protein4e-44177
NC_015740:2998500:300115530011553001904750Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein5e-44177
NC_016856:1326503:133447313344731335144672Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-43176
NC_010102:1779707:179777017977701798441672Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-43176
NC_011094:688626:691458691458692129672Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-43176
NC_020260:1293860:132008213200821320765684Cronobacter sakazakii Sp291, complete genomehypothetical protein5e-43174
NC_016514:2476359:248479224847922485433642Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YedK2e-41169
NC_011294:1006630:101943210194321020058627Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-35148
NC_011205:1107998:112005911200591120685627Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-35148
NC_007005:830467:839680839680840123444Pseudomonas syringae pv. syringae B728a, complete genomeProtein of unknown function DUF1596e-32137
NC_002927:2338549:237523323752332375904672Bordetella bronchiseptica RB50, complete genomehypothetical protein5e-30130
NC_017223:3608749:361330436133043613975672Bordetella pertussis CS chromosome, complete genomehypothetical protein4e-29128
NC_002929:3568106:357311935731193573790672Bordetella pertussis Tohama I, complete genomehypothetical protein4e-29128
NC_002927:3716894:372403337240333724701669Bordetella bronchiseptica RB50, complete genomehypothetical protein1e-27123
NC_016830:4999946:501363850136385014042405Pseudomonas fluorescens F113 chromosome, complete genomeGifsy-2 prophage protein3e-26118
NC_012724:2611000:261839526183952619090696Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein5e-24110
NC_017047:1934430:194526219452621945744483Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein3e-23108
NC_014306:3524980:358332335833233583751429Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein2e-22105
NC_009479:34001:395773957740263687Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmidhypothetical protein4e-22104
NC_014923:5721686:573781757378175738536720Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeprotein of unknown function DUF1592e-21102
NC_015675:6276357:629248862924886293207720Mesorhizobium opportunistum WSM2075 chromosome, complete genomehypothetical protein2e-21102
NC_019973:5650646:566677756667775667496720Mesorhizobium australicum WSM2073, complete genomehypothetical protein2e-21102
NC_008789:1393526:141706114170611417714654Halorhodospira halophila SL1, complete genomeprotein of unknown function DUF1594e-2098.2
NC_020126:7285452:730219773021977302871675Myxococcus stipitatus DSM 14675, complete genomehypothetical protein2e-1892.4
NC_008609:1976403:200921220092122009880669Pelobacter propionicus DSM 2379, complete genomeprotein of unknown function DUF1594e-1891.7
NC_011667:1:642664267106681Thauera sp. MZ1T plasmid pTha01, complete sequenceprotein of unknown function DUF1592e-1789.4
NC_011662:317831:319159319159319890732Thauera sp. MZ1T, complete genomeprotein of unknown function DUF1593e-1788.6
NC_007498:1148249:115640711564071157090684Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein7e-1787.4
NC_015656:1876627:188838118883811889139759Frankia symbiont of Datisca glomerata chromosome, complete genomehypothetical protein2e-1685.9
NC_013966:62930:645566455665242687Haloferax volcanii DS2 plasmid pHV4, complete sequencehypothetical protein4e-1684.7
NC_013889:1159343:117748411774841178059576Thioalkalivibrio sp. K90mix chromosome, complete genomeprotein of unknown function DUF1592e-1582.8
NC_013850:3340882:334924333492433349536294Klebsiella variicola At-22 chromosome, complete genomehypothetical protein2e-1582.8
NC_000964:2146000:219082221908222191496675Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein3e-1581.6
NC_017188:1172181:127280312728031273477675Bacillus amyloliquefaciens TA208 chromosome, complete genomehypothetical protein3e-1581.6
NC_017190:2130651:218654021865402187214675Bacillus amyloliquefaciens LL3 chromosome, complete genomehypothetical protein3e-1581.6
NC_017191:1173989:127438012743801275054675Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein3e-1581.6
NC_002939:47406:503705037051041672Geobacter sulfurreducens PCA, complete genomehypothetical protein5e-1581.3
NC_008538:46469:626706267063428759Arthrobacter sp. FB24 plasmid 2, complete sequenceprotein of unknown function DUF1596e-1580.9
NC_014306:3524980:358306835830683583316249Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein6e-1580.9
NC_012918:2758775:279323327932332793898666Geobacter sp. M21 chromosome, complete genomehypothetical protein1e-1479.7
NC_007298:2856104:288109128810912881756666Dechloromonas aromatica RCB, complete genomeProtein of unknown function DUF1593e-1479
NC_013169:1941410:195737219573721958196825Kytococcus sedentarius DSM 20547, complete genomehypothetical protein6e-1477.8
UCMB5137:1396603:141526914152691415943675Bacillus atrophaeus UCMB-5137hypothetical protein7e-1477.4
NC_002608:64901:723307233073046717Halobacterium sp. NRC-1 plasmid pNRC200, complete sequencehypothetical protein8e-1477
CP002207:1358597:138562713856271386301675Bacillus atrophaeus 1942, complete genomehypothetical protein2e-1376.3
NC_014639:1358597:138562713856271386301675Bacillus atrophaeus 1942 chromosome, complete genomehypothetical protein2e-1376.3
NC_014297:1100997:111895011189501119618669Halalkalicoccus jeotgali B3 chromosome, complete genomehypothetical protein3e-1375.5
NC_015953:4908069:492337249233724924187816Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein1e-1273.2
NC_009342:951761:962759962759963382624Corynebacterium glutamicum R chromosome, complete genomehypothetical protein2e-1272.4
NC_003450:788000:802508802508803131624Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein3e-1272
NC_015572:2186394:218970121897012190366666Methylomonas methanica MC09 chromosome, complete genomehypothetical protein3e-1271.6
NC_017195:2027430:204556120455612046166606Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeprotein YoqW2e-1169.3
NC_000964:2049899:205701220570122057671660Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-1169.3
NC_014034:3111981:312826131282613128893633Rhodobacter capsulatus SB1003 chromosome, complete genomehypothetical protein7e-1167.4
NC_014721:314990:317093317093317725633Caldicellulosiruptor kristjanssonii 177R1B chromosome, completehypothetical protein8e-1167.4
NC_015663:1869000:188317018831701883403234Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein2e-1065.5
NC_004663:1499145:151538015153801516078699Bacteroides thetaiotaomicron VPI-5482, complete genomeconserved hypothetical protein, with conserved domain2e-0962.8
NC_007759:1028977:106019210601921060815624Syntrophus aciditrophicus SB, complete genomehypothetical cytosolic protein3e-0962
NC_015566:2125403:213488321348832135170288Serratia sp. AS12 chromosome, complete genomehypothetical protein3e-0858.5
NC_015567:2125415:213489521348952135182288Serratia sp. AS9 chromosome, complete genomehypothetical protein3e-0858.5
NC_016627:2593242:259770925977092598326618Clostridium clariflavum DSM 19732 chromosome, complete genomehypothetical protein7e-0857.4
NC_012796:2090000:211190121119012112545645Desulfovibrio magneticus RS-1, complete genomehypothetical protein9e-0857
NC_013406:7092510:709603670960367096710675Paenibacillus sp. Y412MC10 chromosome, complete genomehypothetical protein2e-0756.2
NC_008700:367949:380381380381380974594Shewanella amazonensis SB2B, complete genomeprotein of unknown function DUF1595e-0754.7
NC_008700:367949:376741376741377334594Shewanella amazonensis SB2B, complete genomeprotein of unknown function DUF1596e-0754.3