Pre_GI: BLASTP Hits

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Query: NC_003888:4927170:4960649 Streptomyces coelicolor A3(2), complete genome

Start: 4960649, End: 4961074, Length: 426

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6526745:653452865345286534932405Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-40163
NC_003155:5443230:546039354603935460908516Streptomyces avermitilis MA-4680, complete genomeregulatory protein9e-29125
NC_003155:5005913:500675050067505007181432Streptomyces avermitilis MA-4680, complete genomeregulatory protein3e-23107
NC_016111:4613599:462047546204754620912438Streptomyces cattleya NRRL 8057, complete genomeregulatory protein (fragment)5e-2096.3
NC_015957:7249873:726567072656707266197528Streptomyces violaceusniger Tu 4113 chromosome, complete genome1e-0962
NC_003888:3111998:312134431213443121892549Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-0961.2
NC_016109:5290000:5311921531192153146922772Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase3e-0960.8
NC_003155:6295078:630453263045326305194663Streptomyces avermitilis MA-4680, complete genomehypothetical protein3e-0960.5
NC_016582:6999074:701240870124087013058651Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein5e-0959.7
NC_015957:8845274:886138488613848861812429Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein6e-0959.3
NC_003155:210240:2228712228712246911821Streptomyces avermitilis MA-4680, complete genomehypothetical protein5e-0856.6
NC_016109:4581467:459704245970424597479438Kitasatospora setae KM-6054, complete genomehypothetical protein7e-0855.8
NC_007777:1018824:103468310346831035270588Frankia sp. CcI3, complete genomehypothetical protein1e-0755.5
NC_016113:887582:896879896879897598720Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencehypothetical protein2e-0754.7
NC_016582:10015558:1002419110024191100262512061Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase3e-0753.9
NC_013093:3768790:377299837729983773411414Actinosynnema mirum DSM 43827, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase3e-0753.9
NC_015957:336500:344967344967345599633Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein3e-0753.9
NC_010572:8352462:8359316835931683606231308Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-0753.9
NC_003888:7337453:735676673567667357356591Streptomyces coelicolor A3(2), complete genomehypothetical protein6e-0752.8
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase8e-0752.4
NC_013595:8338619:834591383459138346320408Streptosporangium roseum DSM 43021, complete genome9e-0752.4
NC_016111:409852:421359421359421835477Streptomyces cattleya NRRL 8057, complete genomeserine/threonine kinase anti-sigma factor9e-0752.4
NC_013929:3299736:332127133212713321879609Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-0651.2
NC_016111:3577572:358579435857943586369576Streptomyces cattleya NRRL 8057, complete genomeregulatory protein3e-0650.8
NC_016582:1639375:1662621166262116654342814Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative regulatory protein phosphatase4e-0650.1
NC_013929:3600343:362454136245413624975435Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein4e-0650.1
NC_016111:1766010:182153018215301822018489Streptomyces cattleya NRRL 8057, complete genomehypothetical protein5e-0650.1
NC_015957:115133:1151331151331177992667Streptomyces violaceusniger Tu 4113 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism9e-0648.9
NC_014165:2888961:290422029042202904699480Thermobispora bispora DSM 43833 chromosome, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase1e-0548.9