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Query: NC_002971:211331 Coxiella burnetii RSA 493, complete genome

D: 34.2373

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Causes Q-fever. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.

Number of Neighbours: 17




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_011528:535680*Coxiella burnetii CbuK_Q154, complete genome80.1808 %Subject ←→ Query24.6535
NC_011527:525759*Coxiella burnetii CbuG_Q212, complete genome80.2972 %Subject ←→ Query24.8054
NC_010117:1461502*Coxiella burnetii RSA 331, complete genome81.4001 %Subject ←→ Query25.1338
NC_002971:1379567*Coxiella burnetii RSA 493, complete genome81.7984 %Subject ←→ Query25.3769
NC_013416:1588369Aggregatibacter actinomycetemcomitans D11S-1, complete genome75.6281 %Subject ←→ Query26.0305
NC_013416:1429881*Aggregatibacter actinomycetemcomitans D11S-1, complete genome75.5882 %Subject ←→ Query26.7692
NC_009446:351042Dichelobacter nodosus VCS1703A, complete genome77.5888 %Subject ←→ Query28.8728
NC_011528:386417*Coxiella burnetii CbuK_Q154, complete genome91.2653 %Subject ←→ Query30.2955
NC_006510:1921541Geobacillus kaustophilus HTA426, complete genome76.8934 %Subject ←→ Query30.4934
NC_010117:285230*Coxiella burnetii RSA 331, complete genome90.8456 %Subject ←→ Query31.6756
NC_006510:372826*Geobacillus kaustophilus HTA426, complete genome76.9577 %Subject ←→ Query33.0492
NC_009727:1678568*Coxiella burnetii Dugway 7E9-12, complete genome75.9007 %Subject ←→ Query33.3414
NC_009727:1822877*Coxiella burnetii Dugway 7E9-12, complete genome90.8609 %Subject ←→ Query34.0366
NC_011527:1688447*Coxiella burnetii CbuG_Q212, complete genome90.3033 %Subject ←→ Query34.3676
NC_006510:2044347Geobacillus kaustophilus HTA426, complete genome75.0827 %Subject ←→ Query36.7248
NC_014915:2427000Geobacillus sp. Y412MC52 chromosome, complete genome75.7476 %Subject ←→ Query38.0805
NC_015572:4209000*Methylomonas methanica MC09 chromosome, complete genome76.7984 %Subject ←→ Query40.0218