Pre_GI: OUP MCL Sub Cluster Neighbours

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Query: NC_016894:3329562 Acetobacterium woodii DSM 1030 chromosome, complete genome

D: 31.2239

Host Lineage: Acetobacterium woodii; Acetobacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Can use alternative electron acceptors like the lignin degradation product caffeate.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host DescriptionProposed Island FlowSubject Island D
NC_007520:2391675Thiomicrospira crunogena XCL-2, complete genomeSubject ←→ Query26.1369
NC_020301:1084993*Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomeSubject ←→ Query26.2524
NC_008497:32160Lactobacillus brevis ATCC 367, complete genomeSubject ←→ Query26.6719
NC_008497:79144*Lactobacillus brevis ATCC 367, complete genomeSubject ←→ Query27.061
NC_008497:556365*Lactobacillus brevis ATCC 367, complete genomeSubject ←→ Query27.4289
NC_018528:1932000Lactobacillus helveticus R0052 chromosome, complete genomeSubject ←→ Query27.4908
NC_008497:447427*Lactobacillus brevis ATCC 367, complete genomeSubject ←→ Query27.6386
NC_008497:2038612*Lactobacillus brevis ATCC 367, complete genomeSubject ←→ Query28.1022
NC_016112:562570Methylomicrobium alcaliphilum chromosome, complete genomeSubject ←→ Query29.2893
NC_014554:1339566*Lactobacillus plantarum subsp. plantarum ST-III chromosome,Subject ←→ Query29.6723
NC_014554:337268Lactobacillus plantarum subsp. plantarum ST-III chromosome,Subject ←→ Query29.7285
NC_016894:377446*Acetobacterium woodii DSM 1030 chromosome, complete genomeSubject ←→ Query29.7292
NC_015428:2291430*Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeSubject ←→ Query30.5599
NC_007520:1940120*Thiomicrospira crunogena XCL-2, complete genomeSubject ←→ Query31.019
NC_016894:3329562*Acetobacterium woodii DSM 1030 chromosome, complete genomeSubject ←→ Query31.2239
NC_007576:1854136*Lactobacillus sakei subsp. sakei 23K, complete genomeSubject ←→ Query31.3415
NC_007576:1747662*Lactobacillus sakei subsp. sakei 23K, complete genomeSubject ←→ Query32.1833
NC_014554:1019730Lactobacillus plantarum subsp. plantarum ST-III chromosome,Subject ←→ Query32.3869
NC_017516:149657*Neisseria meningitidis H44/76 chromosome, complete genomeSubject ←→ Query32.8672
NC_013198:1921500*Lactobacillus rhamnosus GG, complete genomeSubject ←→ Query33.277
NC_017513:141291*Neisseria meningitidis G2136 chromosome, complete genomeSubject ←→ Query33.7427
NC_013198:298000*Lactobacillus rhamnosus GG, complete genomeSubject ←→ Query33.8795
NC_015572:1421782Methylomonas methanica MC09 chromosome, complete genomeSubject ←→ Query34.0502
NC_015581:128350*Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeSubject ←→ Query34.2108
NC_013199:282901*Lactobacillus rhamnosus Lc 705, complete genomeSubject ←→ Query34.5452
NC_017512:2087098*Neisseria meningitidis WUE 2594, complete genomeSubject ←→ Query34.8796
NC_013199:1886271*Lactobacillus rhamnosus Lc 705, complete genomeSubject ←→ Query35.0179
NC_008497:1498430*Lactobacillus brevis ATCC 367, complete genomeSubject ←→ Query35.4937
NC_020409:297258*Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeSubject ←→ Query35.6929
NC_013016:2014368*Neisseria meningitidis alpha14 chromosome, complete genomeSubject ←→ Query36.1685
NC_008526:2489196*Lactobacillus casei ATCC 334, complete genomeSubject ←→ Query36.8865
NC_015428:823420*Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeSubject ←→ Query37.54
NC_013199:2536705*Lactobacillus rhamnosus Lc 705, complete genomeSubject ←→ Query37.5527
NC_013198:813830*Lactobacillus rhamnosus GG, complete genomeSubject ←→ Query37.9547
NC_015428:700479*Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeSubject ←→ Query38.8838
NC_013199:811929*Lactobacillus rhamnosus Lc 705, complete genomeSubject ←→ Query39.2072
NC_017514:2096452*Neisseria meningitidis M01-240149 chromosome, complete genomeSubject ←→ Query39.4599
NC_005363:3562205Bdellovibrio bacteriovorus HD100, complete genomeSubject ←→ Query39.7128
NC_015572:4209000*Methylomonas methanica MC09 chromosome, complete genomeSubject ←→ Query40.0218
NC_017518:150991*Neisseria meningitidis NZ-05/33 chromosome, complete genomeSubject ←→ Query40.1587
NC_017505:148644*Neisseria meningitidis alpha710 chromosome, complete genomeSubject ←→ Query40.5057
NC_017515:155634*Neisseria meningitidis M04-240196 chromosome, complete genomeSubject Query41.2715
NC_010610:107500Lactobacillus fermentum IFO 3956, complete genomeSubject Query41.4381