Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_006512: Idiomarina loihiensis L2TR, complete genome

NCBI: NC_006512

Host Lineage: Idiomarina loihiensis; Idiomarina; Idiomarinaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This is the type strain for this organism, which was isolated from a hydrothermal vent at a depth of 1300 m from the Lo'ihi Seamount southeast of Hawaii. This organism grows optimally in salt concentrations of 7.5 to 10%. Genome comparison has suggested that the bacterium has maintained its amino acid transport and degradation systems but lost sugar transport and certain sugar metabolic genes suggesting that it lives on amino acids rather than sugars. This may be in keeping with the environment this organism grows in, which is at hydrothermal deep sea vents that are characterized by collections of proteinaceous particles. This organism may colonize these particles by producing exopolysaccharides.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155131258365432343Island text1.5765629.666231.8928Neighbours21BLASTN+IslandViewer 551312.gbk
2696000*71719521196Island text1.5996528.427330.4874Neighbours373BLASTN+IslandViewer 696000.gbk
3728281*75150523225Island text1.5465531.743723.3658Neighbours41BLASTN+IslandViewer 728281.gbk
495289497197619083Island text1.515530.423230.5133Neighbours373BLASTN+952894.gbk
51722138*174672424587Island text1.5916329.777533.3419Neighbours21BLASTN+IslandViewer 1722138.gbk
61942000196596823969Island text1.4330330.234722.4388Neighbours373BLASTN1942000.gbk
72211654223820326550Island text1.7794830.834928.6755Neighbours373BLASTN+2211654.gbk
82789098281990130804Island text2.6961737.435525.5198Neighbours21BLASTN+IslandViewer 2789098.gbk