Pre_GI Gene

Some Help

Host: NC_006512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_006512:1942000 Idiomarina loihiensis L2TR, complete genome

Host Lineage: Idiomarina loihiensis; Idiomarina; Idiomarinaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This is the type strain for this organism, which was isolated from a hydrothermal vent at a depth of 1300 m from the Lo'ihi Seamount southeast of Hawaii. This organism grows optimally in salt concentrations of 7.5 to 10%. Genome comparison has suggested that the bacterium has maintained its amino acid transport and degradation systems but lost sugar transport and certain sugar metabolic genes suggesting that it lives on amino acids rather than sugars. This may be in keeping with the environment this organism grows in, which is at hydrothermal deep sea vents that are characterized by collections of proteinaceous particles. This organism may colonize these particles by producing exopolysaccharides.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
194205419434721419Beta-lactamase class D N-terminal domain fused to uncharacterized conserved domainQuickGO ontologyBLASTP
194368919460492361Probable outer membrane proteinQuickGO ontologyBLASTP
19460831946802720Predicted Zn-dependent hydrolaseQuickGO ontologyBLASTP
19468921947206315hypothetical protein
19472031947439237hypothetical proteinBLASTP
19474361947756321hypothetical protein
19479331948529597hypothetical protein
19486551949080426Acetyltransferase GNAT familyQuickGO ontologyBLASTP
19491191949568450Acetyltransferase GNAT familyQuickGO ontologyBLASTP
19496261950054429hypothetical proteinBLASTP
195031519517361422Beta-lactamase class C family proteinQuickGO ontologyBLASTP
195185819538551998N-terminal winged-HTH domain fused to TolB-like domainQuickGO ontologyBLASTP
19542501955077828Uncharacterized conserved protein containing metal-binding domainQuickGO ontologyBLASTP
19554181956128711fatty acid metabolism regulatorQuickGO ontologyBLASTP
19562721956817546Disulfide bond formation proteinQuickGO ontologyBLASTP
19568361957267432hypothetical proteinBLASTP
195728419583211038Membrane-bound lytic murein transglycosylaseQuickGO ontologyBLASTP
19583081958568261hypothetical proteinBLASTP
195858919597611173Ribonuclease DQuickGO ontologyBLASTP
195975819614281671Acyl-CoA synthetaseQuickGO ontologyBLASTP
19615171962386870Alphabeta superfamily hydrolaseQuickGO ontologyBLASTP
19623981962976579Starvation-inducible outer membrane lipoproteinQuickGO ontologyBLASTP
19629891963288300hypothetical protein
19633551964038684Inactive metal-dependent protease-like proteinQuickGO ontologyBLASTP
196401619659681953ATP-dependent DNA helicaseQuickGO ontologyBLASTP