Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:1285857 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
128585712869031047licheninaseQuickGO ontologyBLASTP
128727012895252256formate acetyltransferaseQuickGO ontologyBLASTP
12896181290325708hypothetical protein
12904141291283870hypothetical protein
12914951292271777pyruvate formate-lyase activating enzymeQuickGO ontologyBLASTP
129229112949212631helicase domain-containing proteinQuickGO ontologyBLASTP
129492413021507227hypothetical proteinBLASTP
130229613034981203type II secretion system F domain-containing proteinQuickGO ontologyBLASTP
130350213045691068twitching motility proteinQuickGO ontologyBLASTP
13046211305139519alkyl hydroperoxide reductaseQuickGO ontologyBLASTP
13052481306219972tRNA synthetase class II D K and NQuickGO ontologyBLASTP
130621913075951377hypothetical proteinBLASTP
130777613089991224SufS subfamily cysteine desulfuraseQuickGO ontologyBLASTP
13090251309858834UBATHIF-type NADFAD binding proteinQuickGO ontologyBLASTP
130991913116551737hypothetical protein
13116591312144486hypothetical protein
13122231312816594hypothetical proteinBLASTP
13128041312998195hypothetical protein
131323913155422304ATPase AAAQuickGO ontologyBLASTP
131563313168501218hypothetical proteinBLASTP
13169571317634678hypothetical protein
131775613188951140hypothetical proteinBLASTP
13189311319068138hypothetical protein
131907113201201050hypothetical protein
132062813219141287ATPaseQuickGO ontologyBLASTP
13220451322575531filamentation induced by cAMP protein ficQuickGO ontologyBLASTP
13226441323165522phospholipase DTransphosphatidylaseQuickGO ontologyBLASTP
132328013242961017hypothetical proteinBLASTP
132465813259441287O-acetylhomoserineO-acetylserine sulfhydrylaseQuickGO ontologyBLASTP
13259701326902933cysteine synthase AQuickGO ontologyBLASTP
132709813281981101tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferaseQuickGO ontologyBLASTP
132821813293001083hypothetical proteinBLASTP
13296141330459846nitrogenase iron proteinQuickGO ontologyBLASTP
13308711331743873radical SAM proteinQuickGO ontologyBLASTP
133173613330461311nitrogenaseQuickGO ontologyBLASTP