Pre_GI: BLASTP Hits

Some Help

Query: NC_013410:1285857:1320628 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1320628, End: 1321914, Length: 1287

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012883:1817358:1823029182302918242701242Thermococcus sibiricus MM 739, complete genomehypothetical protein6e-59228
NC_019942:686564:7016927016927029571266Aciduliprofundum sp. MAR08-339, complete genomeputative ATPase (AAA+ superfamily)6e-54211
NC_000961:597385:6147576147576160761320Pyrococcus horikoshii OT3, complete genomehypothetical protein8e-51201
NC_012588:857500:8734098734098746501242Sulfolobus islandicus M.14.25 chromosome, complete genomeATPase AAA3e-50199
NC_017275:342000:3447993447993460401242Sulfolobus islandicus HVE10/4 chromosome, complete genomeAAA ATPase3e-49196
NC_017276:735678:7543337543337555741242Sulfolobus islandicus REY15A chromosome, complete genomeAAA ATPase4e-49195
NC_007355:3580100:3580100358010035813891290Methanosarcina barkeri str. fusaro chromosome 1, complete sequencehypothetical protein8e-48191
NC_016051:766683:7680677680677693381272Thermococcus sp. AM4 chromosome, complete genomeATPase8e-46184
NC_015578:3980496:4020348402034840215591212Treponema primitia ZAS-2 chromosome, complete genomeATPase2e-44180
NC_000909:1517461:1522462152246215237871326Methanocaldococcus jannaschii DSM 2661, complete genomehypothetical protein2e-43176
NC_000868:1386592:1402265140226514035931329Pyrococcus abyssi GE5, complete genomehypothetical protein2e-42173
NC_012632:2415739:2439602243960224409181317Sulfolobus islandicus M.16.27 chromosome, complete genomehypothetical protein4e-42172
NC_012588:2327767:2355501235550123568171317Sulfolobus islandicus M.14.25 chromosome, complete genomehypothetical protein4e-42172
NC_017276:2240069:2250163225016322514791317Sulfolobus islandicus REY15A chromosome, complete genomeAAA+ ATPase superfamily8e-42171
NC_012623:160224:1713621713621726781317Sulfolobus islandicus Y.N.15.51 chromosome, complete genomehypothetical protein2e-41170
NC_013769:2445245:2463017246301724643331317Sulfolobus islandicus L.D.8.5 chromosome, complete genomehypothetical protein2e-41170
NC_019942:686564:7003457003457016011257Aciduliprofundum sp. MAR08-339, complete genomeputative ATPase (AAA+ superfamily)4e-41169
NC_009073:455381:4724124724124737041293Pyrobaculum calidifontis JCM 11548, complete genomehypothetical protein3e-40166
NC_011593:53044:5463454634558571224Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,hypothetical protein2e-37157
NC_017219:51563:5442554425556541230Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein2e-37157
NC_019942:1270060:1293047129304712943121266Aciduliprofundum sp. MAR08-339, complete genomeputative ATPase (AAA+ superfamily)1e-36154
NC_015164:325212:3407123407123419651254Bacteroides salanitronis DSM 18170 chromosome, complete genomehypothetical protein5e-36152
NC_008701:168662:1743141743141755551242Pyrobaculum islandicum DSM 4184, complete genomehypothetical protein9e-36151
NC_018645:2492779:2511395251139525127231329Desulfobacula toluolica Tol2, complete genomehypothetical protein3e-35149
NC_008609:251608:2594902594902607731284Pelobacter propionicus DSM 2379, complete genomeATPase6e-35148
NC_012883:1817358:1821357182135718226521296Thermococcus sibiricus MM 739, complete genomePredicted ATPase, AAA superfamily1e-34147
NC_010525:285805:2875092875092887501242Thermoproteus neutrophilus V24Sta, complete genomehypothetical protein2e-34147
NC_017098:32196:4676146761479661206Spirochaeta africana DSM 8902 chromosome, complete genomeputative ATPase (AAA+ superfamily)4e-34146
NC_003106:1999000:2015179201517920164261248Sulfolobus tokodaii str. 7, complete genomehypothetical protein3e-34146
NC_018876:516220:5542485542485555311284Methanolobus psychrophilus R15 chromosome, complete genomehypothetical protein4e-34145
NC_009615:2985144:2994786299478629960571272Parabacteroides distasonis ATCC 8503 chromosome, complete genomeATPase3e-33143
NC_012780:189949:2020992020992033131215Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequencehypothetical protein6e-33142
NC_015578:1430112:1439028143902814402571230Treponema primitia ZAS-2 chromosome, complete genomeATPase9e-32138
NC_016048:522637:5381165381165393271212Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein7e-32138
NC_015164:438000:4603724603724616281257Bacteroides salanitronis DSM 18170 chromosome, complete genomehypothetical protein1e-30134
NC_018867:121512:1249551249551261751221Dehalobacter sp. CF chromosome, complete genomeATPase3e-30133
NC_014169:565724:5831095831095844821374Bifidobacterium longum subsp. longum JDM301 chromosome, completehypothetical protein6e-30132
NC_015577:3113907:3147179314717931484141236Treponema azotonutricium ZAS-9 chromosome, complete genomeATPase7e-30132
NC_007181:1740000:1740627174062717418771251Sulfolobus acidocaldarius DSM 639, complete genomehypothetical protein3e-29130
NC_015977:2966971:2980469298046929817221254Roseburia hominis A2-183 chromosome, complete genomearchaeal ATPase family protein5e-29129
NC_015581:680460:6945596945596958211263Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeATPase7e-29128
NC_014727:95875:1006601006601018501191Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,aaa+ superfamily ATPase3e-28126
NC_018720:176306:2234562234562247721317Bifidobacterium asteroides PRL2011 chromosome, complete genomeATPase3e-28126
NC_013714:2477638:2483228248322824843551128Bifidobacterium dentium Bd1, complete genomepredicted ATPase, AAA+ superfamily4e-28125
NC_016645:797000:8121058121058133281224Pyrobaculum sp. 1860 chromosome, complete genomeAAA ATPase4e-27122
NC_015571:801715:8132898132898146141326Porphyromonas gingivalis TDC60, complete genomehypothetical protein4e-26119
NC_002950:1571383:1605923160592316072481326Porphyromonas gingivalis W83, complete genomehypothetical protein1e-25117
NC_012470:1390285:1396812139681213980171206Streptococcus equi subsp. zooepidemicus, complete genomehypothetical protein8e-25115
NC_013895:117429:1554841554841566921209Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein3e-24113
NC_014537:2254061:2262071226207122633391269Vulcanisaeta distributa DSM 14429 chromosome, complete genomeAAA ATPase4e-23109
NC_013895:605488:6139296139296152301302Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein4e-22106
NC_013721:1581370:1583405158340515847421338Gardnerella vaginalis 409-05, complete genomehypothetical protein6e-22105
NC_013926:974668:9900719900719912431173Aciduliprofundum boonei T469 chromosome, complete genomeAAA ATPase5e-2099.4
NC_014216:2097500:2112498211249821137631266Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomehypothetical protein6e-1789
NC_014364:394899:4523714523714535551185Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeATPase2e-1687.4
NC_013222:229190:2595032595032606151113Robiginitalea biformata HTCC2501, complete genomehypothetical protein3e-1583.2
NC_014364:394899:4185634185634197501188Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeATPase3e-1583.2
NC_003413:916398:918903918903919277375Pyrococcus furiosus DSM 3638, complete genomehypothetical protein8e-1582
NC_006512:551312:5546145546145558581245Idiomarina loihiensis L2TR, complete genomePredicted ATPase, AAA+ superfamily3e-1480.1
NC_012623:1563678:158092615809261581549624Sulfolobus islandicus Y.N.15.51 chromosome, complete genomehypothetical protein8e-1478.6
NC_012440:1215838:1240175124017512413351161Persephonella marina EX-H1, complete genomearchaeal ATPase family protein6e-1375.9
NC_006361:2920028:2927772292777229290971326Nocardia farcinica IFM 10152, complete genomehypothetical protein1e-1171.6
NC_014410:2329838:2329838232983823312741437Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,AAA family ATPase2e-1170.9
NC_008278:3601959:3618392361839236196691278Frankia alni ACN14a, complete genomehypothetical protein2e-1170.5
NC_013889:1623697:1637019163701916381851167Thioalkalivibrio sp. K90mix chromosome, complete genomeAAA family ATPase3e-1170.1
NC_014836:2848000:2867709286770928689681260Desulfurispirillum indicum S5 chromosome, complete genomeAAA family ATPase5e-1169.3
NC_015703:754172:7602477602477613741128Runella slithyformis DSM 19594 chromosome, complete genomeAAA ATPase8e-1168.6
NC_012918:928903:9658769658769673361461Geobacter sp. M21 chromosome, complete genomehypothetical protein8e-1168.6
NC_012804:1372667:137511913751191375601483Thermococcus gammatolerans EJ3, complete genomehypothetical protein1e-1068.2
NC_008554:4699577:4713846471384647150931248Syntrophobacter fumaroxidans MPOB, complete genomeATPase, AAA+ superfamily3e-1066.6
NC_014216:1197704:1201623120162312028761254Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeAAA family ATPase1e-0861.6
NC_011060:244949:2576082576082588491242Pelodictyon phaeoclathratiforme BU-1, complete genomehypothetical protein2e-0860.8
NC_015386:125499:1299251299251311421218Treponema succinifaciens DSM 2489 plasmid pTRESU01, completeputative GTP-binding protein1e-0758.5
NC_011978:15059:3516735167365641398Thermotoga neapolitana DSM 4359, complete genomehypothetical protein1e-0758.2
NC_012590:637651:6476426476426488951254Corynebacterium aurimucosum ATCC 700975, complete genomehypothetical protein1e-0758.2
NC_010830:1543548:1545696154569615469041209Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein3e-0757
NC_013714:1830959:1845289184528918464611173Bifidobacterium dentium Bd1, complete genomeATPase4e-0756.2
NC_015164:3793999:3807508380750838086291122Bacteroides salanitronis DSM 18170 chromosome, complete genomehypothetical protein7e-0755.5
NC_015434:2683631:2687264268726426885261263Verrucosispora maris AB-18-032 chromosome, complete genomehypothetical protein3e-0653.5
NC_010814:794211:8206088206088217921185Geobacter lovleyi SZ, complete genomeATPase (AAA+ superfamily)-like protein5e-0652.8
NC_009483:3727490:3743083374308337443301248Geobacter uraniireducens Rf4 chromosome, complete genomeATPase AAA6e-0652.8
NC_002971:951102:9622369622369633781143Coxiella burnetii RSA 493, complete genomehypothetical protein9e-0652