Some Help

Query: NC_013410:1285857:1285857 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1285857, End: 1286903, Length: 1047

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016826:1783828:178579317857931786509717Streptococcus infantarius subsp. infantarius CJ18 chromosome,Endo-beta-1,3-1,4 glucanase (Licheninase)2e-1480.1
NC_014815:4385759:4399024439902444011382115Micromonospora sp. L5 chromosome, complete genomeglycoside hydrolase family 166e-1375.1
NC_007908:4069150:4081680408168040834611782Rhodoferax ferrireducens T118, complete genomeglycoside hydrolase, family 162e-1273.6
NC_016047:2150000:216478021647802165511732Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completebeta-glucanase2e-1273.2
NC_019842:3755275:375659737565973757328732Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,BglS4e-1272.4
NC_020272:162779:185124185124185855732Bacillus amyloliquefaciens IT-45, complete genomeendo-beta-1,3-1,4 glucanase4e-1272.4
UCMB5137:2054735:208146720814672082198732Bacillus atrophaeus UCMB-5137endo-beta-1,3-1,4 glucanase2e-1170.1
NC_015690:3941113:401425540142554014968714Paenibacillus mucilaginosus KNP414 chromosome, complete genomeGluB2e-1170.1
NC_016935:1365463:143366314336631434376714Paenibacillus mucilaginosus 3016 chromosome, complete genomeprotein GluB3e-1169.7
NC_017955:3057592:3084937308493730870542118Modestobacter marinus, complete genomeglycoside hydrolase, family 16; Concanavalin A-like lectin domain8e-1168.2
NC_008358:2808299:281265828126582813542885Hyphomonas neptunium ATCC 15444, complete genomeputative licheninase3e-0962.8
NC_019897:1224798:1224798122479812260541257Thermobacillus composti KWC4 chromosome, complete genomebeta-glucanase/beta-glucan synthetase1e-0860.8
NC_011988:924721:946525946525947331807Agrobacterium vitis S4 chromosome 2, complete genomeendo-1,3-1,4-beta-glycanase2e-0756.6
NC_015953:3227000:3229461322946132307561296Streptomyces sp. SirexAA-E chromosome, complete genomeglycoside hydrolase family protein2e-0653.5
NC_016935:1365463:1423474142347414283094836Paenibacillus mucilaginosus 3016 chromosome, complete genomeprotein BglA28e-0651.6
NC_015690:3941113:4004066400406640089014836Paenibacillus mucilaginosus KNP414 chromosome, complete genomeBglA29e-0651.6