Pre_GI: BLASTP Hits

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Query: NC_013410:1285857:1323280 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1323280, End: 1324296, Length: 1017

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013410:2586500:2589148258914825901671020Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hypothetical protein3e-84311
NC_007775:723925:742311742311743219909Synechococcus sp. JA-3-3Ab, complete genomehypothetical protein1e-0861.2
NC_010424:1356000:1368965136896513699751011Candidatus Desulforudis audaxviator MP104C, complete genomeregulatory protein, DeoR2e-0757.4
NC_015573:2975000:2987424298742429884491026Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genometranscriptional regulator-like protein4e-0755.8
NC_013730:1572889:158489615848961585843948Spirosoma linguale DSM 74, complete genomeHelix-turn-helix type 11 domain protein2e-0653.5
NC_010803:483713:488375488375489355981Chlorobium limicola DSM 245, complete genomehypothetical protein2e-0653.5
NC_019978:922978:938698938698939693996Halobacteroides halobius DSM 5150, complete genomeputative transcriptional regulator4e-0652.8
NC_010546:1175979:119407511940751195073999Cyanothece sp. ATCC 51142 chromosome circular, complete sequencehypothetical protein8e-0651.6