Pre_GI: BLASTP Hits

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Query: NC_013410:1285857:1291495 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1291495, End: 1292271, Length: 777

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006448:1451729:145231514523151453115801Streptococcus thermophilus LMG 18311, complete genomepyruvate-formate lyase activating enzyme9e-71266
NC_016605:233087:236623236623237444822Pediococcus claussenii ATCC BAA-344 chromosome, complete genomepyruvate formate-lyase activating enzyme1e-69263
NC_014376:317312:336200336200336973774Clostridium saccharolyticum WM1 chromosome, complete genomepyruvate formate-lyase activating enzyme2e-64245
NC_010001:3421710:344193634419363442688753Clostridium phytofermentans ISDg, complete genomepyruvate formate-lyase activating enzyme1e-62239
NC_014410:51711:749047490475632729Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,pyruvate formate-lyase activating enzyme2e-59229
NC_019970:35985:607916079161519729Thermoanaerobacterium thermosaccharolyticum M0795, complete genomepyruvate formate-lyase 1-activating enzyme1e-58226
NC_015555:49842:739707397074698729Thermoanaerobacterium xylanolyticum LX-11 chromosome, completepyruvate formate-lyase activating enzyme8e-58223
NC_004461:205068:205068205068205823756Staphylococcus epidermidis ATCC 12228, complete genomeformate acetyltransferase activating enzyme1e-54213
NC_017343:224777:227049227049227804756Staphylococcus aureus subsp. aureus ECT-R 2, complete genomepyruvate formate-lyase activating enzyme3e-53208
NC_009831:2045811:204581120458112046551741Shewanella sediminis HAW-EB3, complete genome(Formate-C-acetyltransferase)-activating enzyme4e-52204
NC_004347:3028000:304450830445083045248741Shewanella oneidensis MR-1, complete genomepyruvate formate-lyase 1 activating enzyme1e-51202
NC_011094:1050700:106119810611981061995798Salmonella enterica subsp. enterica serovar Schwarzengrund strpyruvate formate lyase-activating enzyme 17e-51200
NC_015275:1223088:124302112430211243746726Clostridium lentocellum DSM 5427 chromosome, complete genomepyruvate formate-lyase activating enzyme2e-50199
NC_010159:1668795:167164316716431672377735Yersinia pestis Angola, complete genomepyruvate formate-lyase 1-activating enzyme2e-50199
NC_009801:995396:9998659998651000662798Escherichia coli E24377A, complete genomepyruvate formate-lyase 1-activating enzyme1e-50199
NC_007712:1601499:162391816239181624658741Sodalis glossinidius str. 'morsitans', complete genomepyruvate formate-lyase 1 activating enzyme2e-49195
NC_016818:1605918:160938716093871610184798Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completepyruvate formate-lyase activating enzyme1e-48193
NC_015061:1598920:160241216024121603209798Rahnella sp. Y9602 chromosome, complete genomepyruvate formate-lyase activating enzyme1e-48193
NC_017047:1551836:155532815553281556068741Rahnella aquatilis HX2 chromosome, complete genomepyruvate formate lyase-activating enzyme 12e-48192
NC_014614:2500301:252580225258022526560759Clostridium sticklandii, complete genomepyruvate formate lyase activating enzyme 11e-47189
NC_015460:418826:434556434556435296741Gallibacterium anatis UMN179 chromosome, complete genomepyruvate formate lyase-activating enzyme 13e-47188
NC_014933:2240000:224205322420532242778726Bacteroides helcogenes P 36-108 chromosome, complete genomepyruvate formate-lyase activating enzyme1e-45183
NC_015709:1769806:179812517981251798919795Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completepyruvate formate-lyase activating enzyme3e-43175
NC_013093:2633000:267457826745782675423846Actinosynnema mirum DSM 43827, complete genomepyruvate formate-lyase activating enzyme3e-38158
NC_018750:3315309:332659433265943327406813Streptomyces venezuelae ATCC 10712, complete genomePyruvate formate-lyase activating enzyme1e-36153
NC_013714:1521404:154305415430541543935882Bifidobacterium dentium Bd1, complete genomepflA1 Pyruvate formate-lyase activating enzyme1e-36153
NC_008618:1206157:122747812274781228356879Bifidobacterium adolescentis ATCC 15703, complete genomepyruvate formate-lyase 1 activating enzyme2e-36152
NC_012108:481657:495044495044495952909Desulfobacterium autotrophicum HRM2, complete genomePflC13e-32138
NC_008563:4707826:472980647298064730723918Escherichia coli APEC O1, complete genomeputative pyruvate-formate lyase-activating enzyme5e-31134
NC_010001:1488000:149196114919611492752792Clostridium phytofermentans ISDg, complete genomeglycyl-radical enzyme activating protein family4e-29128
NC_021182:4058873:406569240656924066615924Clostridium pasteurianum BC1, complete genomeglycyl-radical enzyme activator family protein9e-29127
NC_013517:2055071:205983920598392060660822Sebaldella termitidis ATCC 33386, complete genomeglycyl-radical enzyme activating protein family3e-28125
NC_009454:2502724:253056025305602531471912Pelotomaculum thermopropionicum SI, complete genomepyruvate-formate lyase-activating enzyme3e-28125
NC_015577:3621777:364344236434423644344903Treponema azotonutricium ZAS-9 chromosome, complete genomepyruvate formate-lyase-activating enzyme4e-28125
NC_009922:2556033:257209025720902573040951Alkaliphilus oremlandii OhILAs, complete genomeglycyl-radical enzyme activating protein family3e-27122
NC_021184:657093:657093657093658031939Desulfotomaculum gibsoniae DSM 7213, complete genomeglycyl-radical enzyme activator family protein3e-27122
NC_016938:193000:211219211219211995777Melissococcus plutonius DAT561 chromosome 1, complete genomepyruvate formate-lyase activating enzyme2e-27122
NC_009089:1283000:131846813184681319370903Clostridium difficile 630, complete genomeglycerol dehydratase activator2e-27122
NC_012470:2021316:202131620213162022089774Streptococcus equi subsp. zooepidemicus, complete genomepyruvate formate-lyase activating enzyme3e-26119
NC_020063:3690308:371903437190343720008975Enterobacteriaceae bacterium strain FGI 57, complete genomeglycyl-radical enzyme activator family protein1e-25117
NC_012563:2384500:239776123977612398714954Clostridium botulinum A2 str. Kyoto, complete genomeglycyl-radical enzyme activating family protein6e-25114
NC_009697:2173000:218299921829992183952954Clostridium botulinum A str. ATCC 19397 chromosome, completeglycyl-radical enzyme activating family protein5e-25114
NC_009698:2171151:218321821832182184171954Clostridium botulinum A str. Hall chromosome, complete genomeglycyl-radical enzyme activating family protein5e-25114
NC_009495:2244774:225435722543572255319963Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeglycyl-radical activating family protein5e-25114
NC_009699:2287893:230355823035582304511954Clostridium botulinum F str. Langeland chromosome, complete genomeglycyl-radical enzyme activating family protein1e-24113
NC_012658:2295536:231172723117272312680954Clostridium botulinum Ba4 str. 657 chromosome, complete genomeglycyl-radical enzyme activating family protein1e-24113
NC_015573:2463123:250043325004332501374942Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeglycyl-radical enzyme activating protein family3e-24112
NC_010674:1496500:150598315059831506936954Clostridium botulinum B str. Eklund 17B, complete genomebenzylsuccinate synthase activating enzyme9e-24110
NC_008750:450233:464493464493465413921Shewanella sp. W3-18-1, complete genomeglycyl-radical enzyme activating protein family8e-24110
NC_009438:212476:226933226933227853921Shewanella putrefaciens CN-32 chromosome, complete genomeglycyl-radical activating family protein8e-24110
NC_021182:4058873:406031340603134061218906Clostridium pasteurianum BC1, complete genomeglycyl-radical enzyme activator family protein3e-23108
NC_004557:1553000:156226215622621563224963Clostridium tetani E88, complete genomebenzylsuccinate synthase activating enzyme4e-23108
NC_014328:2872721:287420728742072875118912Clostridium ljungdahlii ATCC 49587 chromosome, complete genomepyruvate formate-lyase activating enzyme5e-23108
NC_015424:2917817:293754229375422938438897Aeromonas veronii B565 chromosome, complete genomepyruvate formate-lyase 2-activating enzyme7e-23107
NC_009012:1901492:190757919075791908421843Clostridium thermocellum ATCC 27405, complete genomeRadical SAM7e-22104
NC_014364:4488875:450773445077344508657924Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeglycyl-radical enzyme activating protein family8e-22103
NC_021182:966839:969602969602970534933Clostridium pasteurianum BC1, complete genomeglycyl-radical enzyme activator family protein2e-21103
NC_010001:1745089:175808817580881759035948Clostridium phytofermentans ISDg, complete genomeglycyl-radical enzyme activating protein family2e-21102
NC_015500:311845:324489324489325265777Treponema brennaborense DSM 12168 chromosome, complete genome(Formate-C-acetyltransferase)-activating enzyme3e-21102
NC_016627:1960097:197152619715261972368843Clostridium clariflavum DSM 19732 chromosome, complete genomeglycine radical enzyme activase, YjjW family3e-2099
NC_016584:5625975:563927856392785640246969Desulfosporosinus orientis DSM 765 chromosome, complete genomeglycyl-radical enzyme activator family protein5e-2098.2
NC_014618:4010689:404083540408354041698864Enterobacter cloacae SCF1 chromosome, complete genomeradical SAM protein6e-2097.8
NC_016048:3856665:387205538720553872969915Oscillibacter valericigenes Sjm18-20, complete genomeglycyl-radical enzyme activating family protein2e-1996.3
NC_010723:1465097:147619614761961477149954Clostridium botulinum E3 str. Alaska E43, complete genomeglycyl-radical enzyme activating family protein4e-1995.1
NC_013364:928486:951505951505952404900Escherichia coli O111:H- str. 11128, complete genomeputative pyruvate formate lyase activating enzyme2e-1789.7
NC_013353:922937:947234947234948133900Escherichia coli O103:H2 str. 12009, complete genomepyruvate formate lyase activating enzyme2e-1789.7
AP010958:922937:947234947234948133900Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted pyruvate formate lyase activating enzyme2e-1789.7
NC_008751:607209:624617624617625540924Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeglycyl-radical enzyme activating protein family2e-1789.4
NC_002937:2933000:293303029330302933953924Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completepyruvate formate-lyase 1 activating enzyme, putative4e-1788.6
NC_009633:3933941:394874939487493949696948Alkaliphilus metalliredigens QYMF chromosome, complete genomeglycyl-radical activating family protein4e-1788.6
NC_014363:114239:141718141718142665948Olsenella uli DSM 7084 chromosome, complete genomeglycyl-radical enzyme activating protein family1e-1687
NC_013716:5141269:516390851639085164771864Citrobacter rodentium ICC168, complete genomeradical SAM superfamily protein1e-1686.7
NC_014328:4316008:432998643299864330936951Clostridium ljungdahlii ATCC 49587 chromosome, complete genomepyruvate formate-lyase activating enzyme3e-1685.5
NC_014624:2297000:230867423086742309594921Eubacterium limosum KIST612 chromosome, complete genomeputative pyruvate-formate lyase-activating enzyme7e-1684.3
NC_009615:919495:924724924724925629906Parabacteroides distasonis ATCC 8503 chromosome, complete genomepyruvate-formate lyase-activating enzyme2e-1479.3
NC_014828:2657623:267336426733642673885522Ethanoligenens harbinense YUAN-3 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-1479.3
NC_021184:657093:670474670474671469996Desulfotomaculum gibsoniae DSM 7213, complete genomeglycyl-radical enzyme activator family protein5e-1374.7
NC_013316:120759:142198142198142737540Clostridium difficile R20291, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-1273.2
NC_009089:117980:140393140393140932540Clostridium difficile 630, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-1273.2
NC_014393:1421122:142540714254071426303897Clostridium cellulovorans 743B chromosome, complete genomeRadical SAM domain-containing protein1e-1170.1
NC_012673:77610:887168871689174459Exiguobacterium sp. AT1b, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0963.9
NC_019757:3010262:302396830239683024591624Cylindrospermum stagnale PCC 7417, complete genomeorganic radical activating enzyme3e-0962.4
NC_014614:1090000:109602810960281096540513Clostridium sticklandii, complete genomeanaerobic ribonucleotide reductase activating protein4e-0962
NC_008095:3371673:339190633919063392514609Myxococcus xanthus DK 1622, complete genomeputative radical SAM domain protein2e-0859.7
NC_006322:3628143:364951636495163650028513Bacillus licheniformis ATCC 14580, complete genomehypothetical protein2e-0859.7
NC_006270:3627974:364934736493473649859513Bacillus licheniformis ATCC 14580, complete genomeiron-binding, putative oxidoreductase2e-0859.3
NC_014830:3387479:339491033949103395539630Intrasporangium calvum DSM 43043 chromosome, complete genomeRadical SAM domain protein4e-0858.5
NC_008701:195850:211332211332212051720Pyrobaculum islandicum DSM 4184, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein8e-0857.8
NC_012658:1052957:106572210657221066315594Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative anaerobic ribonucleoside-triphosphate reductase activating protein7e-0857.8
NC_009515:616432:632876632876633580705Methanobrevibacter smithii ATCC 35061, complete genomepyruvate formate-lyase activating enzyme, PflA1e-0757
NC_021171:608315:628611628611629099489Bacillus sp. 1NLA3E, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0756.6
NC_009699:1122000:112656011265601127153594Clostridium botulinum F str. Langeland chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-0756.2
NC_016023:1923170:192802619280261928502477Bacillus coagulans 36D1 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein2e-0755.8
NC_005945:3359598:337082333708233371122300Bacillus anthracis str. Sterne, complete genomeadical activating4e-0755.5
NC_020291:79502:941829418294691510Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein NrdG7e-0754.7
NC_014829:4511738:451786345178634518372510Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein9e-0754.3
NC_015574:391869:397742397742398455714Methanobacterium sp. SWAN-1 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0653.9
NC_012814:1494331:152164215216421522391750Bifidobacterium animalis subsp. lactis Bl-04, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0653.5
NC_012815:1494263:152136015213601522109750Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0653.5
NC_011835:625472:652571652571653320750Bifidobacterium animalis subsp. lactis AD011 chromosome, completeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0653.5
NC_017214:191791:218888218888219637750Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeAnaerobic ribonucleoside-triphosphate reductase activating protein1e-0653.5
NC_017215:1499179:152627615262761527025750Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,[Formate-C-acetyltransferase]-activating enzyme1e-0653.5
NC_017216:1494190:152128715212871522036750Bifidobacterium animalis subsp. lactis BLC1, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0653.5
NC_017217:1499832:152692915269291527678750Bifidobacterium animalis subsp. lactis V9 chromosome, completeanaerobic ribonucleoside-triphosphate reductase activating protein1e-0653.5
NC_014328:180482:182633182633183142510Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative anaerobic ribonucleoside-triphosphate reductase activating protein6e-0651.6
NC_014633:837588:882099882099882599501Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceribonucleoside-triphosphate reductase class III activase subunit7e-0651.2
NC_015320:273979:281574281574282272699Archaeoglobus veneficus SNP6 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein8e-0650.8