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Query: NC_013410:1285857 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1285857, End: 1333046, Length: 47190

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011027:17639521763952178259918648Chlorobaculum parvum NCIB 8327, complete genome7e-24121BLASTN svgBLASTP svg
NC_003552:47826354782635480759924965Methanosarcina acetivorans C2A, complete genome1e-22117BLASTN svgBLASTP svg
NC_015416:52501852501854987224855Methanosaeta concilii GP-6 chromosome, complete genome2e-21113BLASTN svgBLASTP svg
NC_012881:47804247804249931621275Desulfovibrio salexigens DSM 2638, complete genome2e-21113BLASTN svgBLASTP svg
NC_013959:82686882686887209945232Sideroxydans lithotrophicus ES-1 chromosome, complete genome7e-21111BLASTN svgBLASTP svg
NC_003901:86024286024288409923858Methanosarcina mazei Go1, complete genome4e-19105BLASTN svgBLASTP svg
NC_021150:49296704929670497270143032Azotobacter vinelandii CA6, complete genome2e-18103BLASTN svgBLASTP svg
NC_012560:49296834929683497271443032Azotobacter vinelandii DJ, complete genome2e-18103BLASTN svgBLASTP svg
NC_008278:74097117409711743227422564Frankia alni ACN14a, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_020389:71417871417873707322896Methanosarcina mazei Tuc01, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_015500:1236874*1236874127809941226Treponema brennaborense DSM 12168 chromosome, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_010546:55377455377457628522512Cyanothece sp. ATCC 51142 chromosome circular, complete sequence2e-1179.8BLASTN svgBLASTP svg
NC_013771:68496668496671109926134Cyanobacterium UCYN-A, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_009801:995396995396101946824073Escherichia coli E24377A, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_014216:28603422860342288514124800Desulfurivibrio alkaliphilus AHT2 chromosome, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_011894:40669264066926411059943674Methylobacterium nodulans ORS 2060, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_020291:15354021535402156216926768Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome4e-0765.9BLASTN svgBLASTP svg
NC_013714:1521404*1521404154642725024Bifidobacterium dentium Bd1, complete genome6e-0661.9BLASTN svgBLASTP svg