Pre_GI Gene

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Host: NC_009512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:5632591 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
563259156336491059ABC transporter relatedQuickGO ontologyBLASTP
56338815634750870transcriptional regulator LysR familyQuickGO ontologyBLASTP
563476056370122253heavy metal translocating P-type ATPaseQuickGO ontologyBLASTP
56370965637539444putative transcriptional regulator MerR familyQuickGO ontologyBLASTP
56376585637999342Thymidylate synthase-like proteinQuickGO ontologyBLASTP
563828656427764491AAA ATPaseQuickGO ontologyBLASTP
564289756444591563hypothetical proteinBLASTP
56452165646046831hypothetical proteinBLASTP
56465285646737210hypothetical proteinBLASTP
56467345647123390hypothetical proteinBLASTP
56475345647977444hypothetical proteinBLASTP
564821256488566453-isopropylmalate dehydratase small subunitQuickGO ontologyBLASTP
5648863565026614043-isopropylmalate dehydratase large subunitQuickGO ontologyBLASTP
565054856518791332major facilitator superfamily MFS_1QuickGO ontologyBLASTP
56519655652900936pyruvate carboxyltransferaseQuickGO ontologyBLASTP
565289756540871191L-carnitine dehydratasebile acid-inducible protein FQuickGO ontologyBLASTP
56541955655103909transcriptional regulator LysR familyQuickGO ontologyBLASTP
56552785655487210hypothetical proteinBLASTP
56555095655901393hypothetical protein
565596556570321068hypothetical protein
565722556585051281DNA-directed DNA polymeraseQuickGO ontologyBLASTP
56584925658920429putative prophage repressorQuickGO ontologyBLASTP
565919956607761578hypothetical proteinBLASTP
56608545661120267BLASTP
566130156630191719hypothetical proteinBLASTP
56630775663838762hypothetical protein
5664307566440599
56646935665058366hypothetical proteinBLASTP
56653995666025627hypothetical proteinBLASTP
56660475666430384hypothetical proteinBLASTP
56664335666912480hypothetical proteinBLASTP
56669435667458516hypothetical proteinBLASTP
56680065668254249hypothetical proteinBLASTP
56683505669183834Thymidylate synthaseQuickGO ontologyBLASTP
56691805669692513hypothetical protein
566969256717762085hypothetical protein
567177956741572379phage integrase family proteinQuickGO ontology
567415456753831230phage integrase family proteinQuickGO ontologyBLASTP
56754725676176705Thymidylate synthaseQuickGO ontologyBLASTP
56762285677034807prolipoprotein diacylglyceryl transferaseQuickGO ontologyBLASTP
56770515677833783protein of unknown function DUF81QuickGO ontologyBLASTP
56779645678710747protein of unknown function DUF833QuickGO ontologyBLASTP
567899856812772280PTSINtr with GAF domain PtsPQuickGO ontologyBLASTP
56813005681779480NUDIX hydrolaseQuickGO ontologyBLASTP
56819215682577657HAD-superfamily subfamily IB hydrolase TIGR01490QuickGO ontologyBLASTP
56827075683132426integral membrane protein-like proteinQuickGO ontology
568320256847161515threonine dehydratase biosyntheticQuickGO ontologyBLASTP
56848505685524675ribose 5-phosphate isomeraseQuickGO ontologyBLASTP
56856295686531903SdiA-regulated domain proteinQuickGO ontologyBLASTP